miRNA display CGI


Results 21 - 40 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 3' -53.9 NC_001847.1 + 47723 0.73 0.62067
Target:  5'- aGCUCUUcgagcgcggcggGCGGGGCCCcGCcc-GCGCg -3'
miRNA:   3'- gCGAGAA------------UGCUCCGGGaCGcuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 27652 0.73 0.62067
Target:  5'- gGCUCggAgGAagacccGGCCCUGCucGACGCg -3'
miRNA:   3'- gCGAGaaUgCU------CCGGGACGcuUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 130465 0.73 0.62067
Target:  5'- gGCUCggAgGAagacccGGCCCUGCucGACGCg -3'
miRNA:   3'- gCGAGaaUgCU------CCGGGACGcuUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 87920 0.73 0.624837
Target:  5'- aGCUCaacgccguggccgAgGAGGCCCUGCGGGA-GCg -3'
miRNA:   3'- gCGAGaa-----------UgCUCCGGGACGCUUUgCG- -5'
6677 3' -53.9 NC_001847.1 + 112554 0.73 0.641508
Target:  5'- aCGCgacCggGCG-GGCCCUGCcccGggGCGCc -3'
miRNA:   3'- -GCGa--GaaUGCuCCGGGACG---CuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 90837 0.73 0.641508
Target:  5'- cCGCUCUgGCGcuGGCCCgccGCGccGCGCc -3'
miRNA:   3'- -GCGAGAaUGCu-CCGGGa--CGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 18170 0.73 0.641508
Target:  5'- aCGCUCgccccaGCG-GGCCCaugGCGGAcGCGCg -3'
miRNA:   3'- -GCGAGaa----UGCuCCGGGa--CGCUU-UGCG- -5'
6677 3' -53.9 NC_001847.1 + 9741 0.73 0.641508
Target:  5'- aCGCgacCggGCG-GGCCCUGCcccGggGCGCc -3'
miRNA:   3'- -GCGa--GaaUGCuCCGGGACG---CuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 88537 0.73 0.651919
Target:  5'- aCGCUCgugcgccGCGAGGCCgCgccgGCGGggcuGACGCc -3'
miRNA:   3'- -GCGAGaa-----UGCUCCGG-Ga---CGCU----UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 20707 0.73 0.651919
Target:  5'- uGCUacgaggACGAGGCCCcgcugGCGGAcCGCu -3'
miRNA:   3'- gCGAgaa---UGCUCCGGGa----CGCUUuGCG- -5'
6677 3' -53.9 NC_001847.1 + 61533 0.73 0.651919
Target:  5'- aGgUC--ACGGGGCUCUGCGAGcCGCc -3'
miRNA:   3'- gCgAGaaUGCUCCGGGACGCUUuGCG- -5'
6677 3' -53.9 NC_001847.1 + 80191 0.73 0.651919
Target:  5'- cCGcCUCUgcggGCGGGuGCgCC-GCGAAGCGCa -3'
miRNA:   3'- -GC-GAGAa---UGCUC-CG-GGaCGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 91567 0.73 0.662314
Target:  5'- aCGCUggggCgcGCGucGCCCgcgGCGAAGCGCg -3'
miRNA:   3'- -GCGA----GaaUGCucCGGGa--CGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 5210 0.73 0.662314
Target:  5'- gGCUCUcucgccGCGGcGGCCg-GCGggGCGCg -3'
miRNA:   3'- gCGAGAa-----UGCU-CCGGgaCGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 108023 0.73 0.662314
Target:  5'- gGCUCUcucgccGCGGcGGCCg-GCGggGCGCg -3'
miRNA:   3'- gCGAGAa-----UGCU-CCGGgaCGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 53259 0.72 0.672684
Target:  5'- cCGC-CUcgGCGGGGCgCUGCGcgcccAGGCGCg -3'
miRNA:   3'- -GCGaGAa-UGCUCCGgGACGC-----UUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 71082 0.72 0.683019
Target:  5'- gCGCUCggccgGCGcGGCCagagGCGAGAgGCg -3'
miRNA:   3'- -GCGAGaa---UGCuCCGGga--CGCUUUgCG- -5'
6677 3' -53.9 NC_001847.1 + 16456 0.72 0.70355
Target:  5'- -aCUacgACGAGGCCCgcgGCGcaGAGCGCg -3'
miRNA:   3'- gcGAgaaUGCUCCGGGa--CGC--UUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 16643 0.72 0.70355
Target:  5'- gGCUUUgccguCGGGGCCCcGCGccuacAGGCGCg -3'
miRNA:   3'- gCGAGAau---GCUCCGGGaCGC-----UUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 37654 0.72 0.70355
Target:  5'- aCGCUCgUGCGGcagccGCCCaGCGAggUGCa -3'
miRNA:   3'- -GCGAGaAUGCUc----CGGGaCGCUuuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.