miRNA display CGI


Results 21 - 40 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 3' -53.9 NC_001847.1 + 12331 0.67 0.915281
Target:  5'- gCGCgccauCGAGGUCCUGCccGAgucAGCGCc -3'
miRNA:   3'- -GCGagaauGCUCCGGGACG--CU---UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 13232 0.66 0.949849
Target:  5'- aGCUCcgcgauggccaGCGGGGCCaCgcggGCGGuuCGCa -3'
miRNA:   3'- gCGAGaa---------UGCUCCGG-Ga---CGCUuuGCG- -5'
6677 3' -53.9 NC_001847.1 + 13271 0.66 0.946372
Target:  5'- uGCUgacUGCGGugccGGCCCUGUGc-GCGCg -3'
miRNA:   3'- gCGAga-AUGCU----CCGGGACGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 13396 0.67 0.931938
Target:  5'- gCGCgcc-GCG-GGCCCUGgGAGaaagacggGCGCg -3'
miRNA:   3'- -GCGagaaUGCuCCGGGACgCUU--------UGCG- -5'
6677 3' -53.9 NC_001847.1 + 13423 0.7 0.78615
Target:  5'- gCGCUCgcggaGCGGGG-CCUGCGcuggcuguaucuagcGGGCGCg -3'
miRNA:   3'- -GCGAGaa---UGCUCCgGGACGC---------------UUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 14418 0.68 0.896412
Target:  5'- aGcCUCUgUGCGGGGCuCCgcuguuugGCGccGAGCGCg -3'
miRNA:   3'- gC-GAGA-AUGCUCCG-GGa-------CGC--UUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 14643 0.69 0.852359
Target:  5'- gCGCUCgcGCGccGCUCgcugcgaGCGggGCGCg -3'
miRNA:   3'- -GCGAGaaUGCucCGGGa------CGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 15106 0.68 0.896412
Target:  5'- gCGCUCaUGCuGAcGGCCCUGaCGGcGGCGg -3'
miRNA:   3'- -GCGAGaAUG-CU-CCGGGAC-GCU-UUGCg -5'
6677 3' -53.9 NC_001847.1 + 16456 0.72 0.70355
Target:  5'- -aCUacgACGAGGCCCgcgGCGcaGAGCGCg -3'
miRNA:   3'- gcGAgaaUGCUCCGGGa--CGC--UUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 16643 0.72 0.70355
Target:  5'- gGCUUUgccguCGGGGCCCcGCGccuacAGGCGCg -3'
miRNA:   3'- gCGAGAau---GCUCCGGGaCGC-----UUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 17588 0.71 0.733854
Target:  5'- aGCaCggGCGGGGCCC-GCGGAaagggguuGCGCa -3'
miRNA:   3'- gCGaGaaUGCUCCGGGaCGCUU--------UGCG- -5'
6677 3' -53.9 NC_001847.1 + 17732 0.67 0.921081
Target:  5'- gGCUCggcgUACGAGGCggccacggCCUcGCGcu-CGCa -3'
miRNA:   3'- gCGAGa---AUGCUCCG--------GGA-CGCuuuGCG- -5'
6677 3' -53.9 NC_001847.1 + 17782 0.69 0.844257
Target:  5'- gCGCUCcuucgGCGGGGCUUUGCucGGcCGCg -3'
miRNA:   3'- -GCGAGaa---UGCUCCGGGACGcuUU-GCG- -5'
6677 3' -53.9 NC_001847.1 + 18170 0.73 0.641508
Target:  5'- aCGCUCgccccaGCG-GGCCCaugGCGGAcGCGCg -3'
miRNA:   3'- -GCGAGaa----UGCuCCGGGa--CGCUU-UGCG- -5'
6677 3' -53.9 NC_001847.1 + 18507 0.71 0.753616
Target:  5'- cCGCggCUgcCGAGGCCagcgCUGCG-GGCGCg -3'
miRNA:   3'- -GCGa-GAauGCUCCGG----GACGCuUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 19374 0.66 0.956347
Target:  5'- aCGCUCUggcCGAgccggcuccccgcucGGCUCcGCGGcGACGCa -3'
miRNA:   3'- -GCGAGAau-GCU---------------CCGGGaCGCU-UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 19619 0.7 0.818784
Target:  5'- aGCUCgggccCGGGGCgCCgGCGucGGCGCg -3'
miRNA:   3'- gCGAGaau--GCUCCG-GGaCGCu-UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 19647 0.69 0.867178
Target:  5'- nCGCggccgCUUGCG-GGCCCggccgccggaaacUGCGAccggguGCGCg -3'
miRNA:   3'- -GCGa----GAAUGCuCCGGG-------------ACGCUu-----UGCG- -5'
6677 3' -53.9 NC_001847.1 + 20707 0.73 0.651919
Target:  5'- uGCUacgaggACGAGGCCCcgcugGCGGAcCGCu -3'
miRNA:   3'- gCGAgaa---UGCUCCGGGa----CGCUUuGCG- -5'
6677 3' -53.9 NC_001847.1 + 20966 0.68 0.902945
Target:  5'- gCGUUUggaGCGAGcGCCCaGUGAGcGCGCg -3'
miRNA:   3'- -GCGAGaa-UGCUC-CGGGaCGCUU-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.