miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 3' -53.9 NC_001847.1 + 1427 0.66 0.936995
Target:  5'- cCGCgg-UGCGcGGGCCCagGCGcGugGCc -3'
miRNA:   3'- -GCGagaAUGC-UCCGGGa-CGCuUugCG- -5'
6677 3' -53.9 NC_001847.1 + 1910 0.68 0.889641
Target:  5'- gCGCg--UGCGAGaGCCCgccGCG--GCGCg -3'
miRNA:   3'- -GCGagaAUGCUC-CGGGa--CGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 2087 0.69 0.852359
Target:  5'- gCGC-CccGCGGGGCCCgcgcggcgGCGGGcCGCg -3'
miRNA:   3'- -GCGaGaaUGCUCCGGGa-------CGCUUuGCG- -5'
6677 3' -53.9 NC_001847.1 + 3126 0.7 0.818784
Target:  5'- gCGCcUUUACGAGcaGCCCcGCGAgcAGCGUg -3'
miRNA:   3'- -GCGaGAAUGCUC--CGGGaCGCU--UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 3249 0.66 0.954779
Target:  5'- uGCUCgccgGCGgcagGGGCgCCgGCGccGCGCg -3'
miRNA:   3'- gCGAGaa--UGC----UCCG-GGaCGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 3608 0.69 0.867936
Target:  5'- gCGCUCUgcaGCcAGGCCaugGCGucgcGGCGCg -3'
miRNA:   3'- -GCGAGAa--UGcUCCGGga-CGCu---UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 3989 0.71 0.763335
Target:  5'- gGC-CggGCGcgcGGCCCcGCGggGCGCc -3'
miRNA:   3'- gCGaGaaUGCu--CCGGGaCGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 4621 0.69 0.844257
Target:  5'- aGCUCggcGCGGgcGGCCCgccgGCGcucGCGCg -3'
miRNA:   3'- gCGAGaa-UGCU--CCGGGa---CGCuu-UGCG- -5'
6677 3' -53.9 NC_001847.1 + 5210 0.73 0.662314
Target:  5'- gGCUCUcucgccGCGGcGGCCg-GCGggGCGCg -3'
miRNA:   3'- gCGAGAa-----UGCU-CCGGgaCGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 6089 0.76 0.488679
Target:  5'- gCGCUCgcggaggcGCGAGacGCCC-GCGAGGCGCg -3'
miRNA:   3'- -GCGAGaa------UGCUC--CGGGaCGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 6749 0.66 0.958628
Target:  5'- gGCgUCgucUGCGGugcGGCCggUGCGAGGCGCc -3'
miRNA:   3'- gCG-AGa--AUGCU---CCGGg-ACGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 7264 0.66 0.954779
Target:  5'- gCGCg---GCGGGGgCaC-GCGAGACGCu -3'
miRNA:   3'- -GCGagaaUGCUCCgG-GaCGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 8118 0.66 0.945926
Target:  5'- gCGCaggcGCGGGGCCCcagggGCGGGcggugcuGCGCg -3'
miRNA:   3'- -GCGagaaUGCUCCGGGa----CGCUU-------UGCG- -5'
6677 3' -53.9 NC_001847.1 + 8250 0.66 0.936995
Target:  5'- aGCUCUcACGAccGuGCCC-GUGAGaACGCu -3'
miRNA:   3'- gCGAGAaUGCU--C-CGGGaCGCUU-UGCG- -5'
6677 3' -53.9 NC_001847.1 + 9741 0.73 0.641508
Target:  5'- aCGCgacCggGCG-GGCCCUGCcccGggGCGCc -3'
miRNA:   3'- -GCGa--GaaUGCuCCGGGACG---CuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 9889 0.66 0.958628
Target:  5'- -uCUUUUGCGAGGCCgUcGCGcucGugGCc -3'
miRNA:   3'- gcGAGAAUGCUCCGGgA-CGCu--UugCG- -5'
6677 3' -53.9 NC_001847.1 + 11755 0.7 0.800909
Target:  5'- aGC-CgcACGAGGCUUUGUGuGAGCGCu -3'
miRNA:   3'- gCGaGaaUGCUCCGGGACGC-UUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 11847 0.74 0.56887
Target:  5'- gGcCUCUgGCGccGCCCUGCGGgcGGCGCg -3'
miRNA:   3'- gC-GAGAaUGCucCGGGACGCU--UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 12017 0.66 0.936995
Target:  5'- cCGUUCcaGCGccccucuGCCCgGCGGAGCGCu -3'
miRNA:   3'- -GCGAGaaUGCuc-----CGGGaCGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 12061 0.68 0.889641
Target:  5'- gCGCUgCggacgcCGAGGCC--GCGGAGCGCc -3'
miRNA:   3'- -GCGA-Gaau---GCUCCGGgaCGCUUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.