miRNA display CGI


Results 1 - 20 of 267 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 3' -53.9 NC_001847.1 + 135131 0.67 0.921081
Target:  5'- gGgUCgcAgGGGGCCCgcgcgGCGcgGCGCg -3'
miRNA:   3'- gCgAGaaUgCUCCGGGa----CGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 135024 0.71 0.763335
Target:  5'- cCGCgg--GCGGGGCCggggcGCGggGCGCc -3'
miRNA:   3'- -GCGagaaUGCUCCGGga---CGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 134839 0.68 0.896412
Target:  5'- aGCUCcgGCGGGGCgCggggacgGCGcccGCGCg -3'
miRNA:   3'- gCGAGaaUGCUCCGgGa------CGCuu-UGCG- -5'
6677 3' -53.9 NC_001847.1 + 134126 0.71 0.733854
Target:  5'- gCGCgccgCggGCGGcGGCCUgGUGGAGCGCg -3'
miRNA:   3'- -GCGa---GaaUGCU-CCGGGaCGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 133317 0.67 0.926634
Target:  5'- cCGCUg-UugGAGGUgaCUGUGGgcGACGCg -3'
miRNA:   3'- -GCGAgaAugCUCCGg-GACGCU--UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 133154 0.68 0.882635
Target:  5'- uGCUC-UACGAcccgcuGCCCgGgGAGGCGCu -3'
miRNA:   3'- gCGAGaAUGCUc-----CGGGaCgCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 133056 0.75 0.548423
Target:  5'- cCGC-CgcGCG-GGCCCcGCGggGCGCu -3'
miRNA:   3'- -GCGaGaaUGCuCCGGGaCGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 132985 0.68 0.889641
Target:  5'- cCGCUCUUcccCGA-GCCCUgGCGcccGGCGCu -3'
miRNA:   3'- -GCGAGAAu--GCUcCGGGA-CGCu--UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 132752 0.69 0.863353
Target:  5'- aCGaCUCUgggcCGAGGCgCCgGCGAaaagccgccgccgccGACGCg -3'
miRNA:   3'- -GC-GAGAau--GCUCCG-GGaCGCU---------------UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 132693 0.7 0.818784
Target:  5'- cCGCUCgauCGGGaGCUcgCUGCGGcuGGCGCg -3'
miRNA:   3'- -GCGAGaauGCUC-CGG--GACGCU--UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 132356 0.67 0.921081
Target:  5'- gCGCUCgcgGCccugGAGGCCgCcgGCgGggGCGCc -3'
miRNA:   3'- -GCGAGaa-UG----CUCCGG-Ga-CG-CuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 132162 0.69 0.852359
Target:  5'- gGCUCcagcGCGcGGCCCcgGCGGcgcuGCGCg -3'
miRNA:   3'- gCGAGaa--UGCuCCGGGa-CGCUu---UGCG- -5'
6677 3' -53.9 NC_001847.1 + 132126 0.74 0.610261
Target:  5'- uGCUCg-GCGcGGCCCgcgacgcgGUGGAGCGCg -3'
miRNA:   3'- gCGAGaaUGCuCCGGGa-------CGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 131970 0.66 0.941806
Target:  5'- uCGC-CUgccGCGAGGCgCUG-GAGGCGg -3'
miRNA:   3'- -GCGaGAa--UGCUCCGgGACgCUUUGCg -5'
6677 3' -53.9 NC_001847.1 + 131753 0.72 0.713727
Target:  5'- cCGCUgCUUGCGgaGGGCUUUGCGcggcucGGCGCg -3'
miRNA:   3'- -GCGA-GAAUGC--UCCGGGACGCu-----UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 130465 0.73 0.62067
Target:  5'- gGCUCggAgGAagacccGGCCCUGCucGACGCg -3'
miRNA:   3'- gCGAGaaUgCU------CCGGGACGcuUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 130105 0.69 0.844257
Target:  5'- aCGCgggCUgggACGAGuacgagagcGCCCUcgcgcgcgaggGCGAGGCGCa -3'
miRNA:   3'- -GCGa--GAa--UGCUC---------CGGGA-----------CGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 129356 0.66 0.936995
Target:  5'- gCGCgg-UGCcGGGCCCgggGCuAGACGCc -3'
miRNA:   3'- -GCGagaAUGcUCCGGGa--CGcUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 129218 0.69 0.860254
Target:  5'- uGCUCgcgGCGAccgcuaaugGGCCCgggcgcacaaucUGCGAcGGCGCg -3'
miRNA:   3'- gCGAGaa-UGCU---------CCGGG------------ACGCU-UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 129005 0.67 0.915281
Target:  5'- uCGCUCaccgcCGGGGUCCUggGCGGGAaGCg -3'
miRNA:   3'- -GCGAGaau--GCUCCGGGA--CGCUUUgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.