miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 3' -53.9 NC_001847.1 + 90180 0.79 0.339279
Target:  5'- aGC-CUUGCGGGGCUgCUGCGgcGCGCc -3'
miRNA:   3'- gCGaGAAUGCUCCGG-GACGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 71082 0.72 0.683019
Target:  5'- gCGCUCggccgGCGcGGCCagagGCGAGAgGCg -3'
miRNA:   3'- -GCGAGaa---UGCuCCGGga--CGCUUUgCG- -5'
6677 3' -53.9 NC_001847.1 + 53259 0.72 0.672684
Target:  5'- cCGC-CUcgGCGGGGCgCUGCGcgcccAGGCGCg -3'
miRNA:   3'- -GCGaGAa-UGCUCCGgGACGC-----UUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 108023 0.73 0.662314
Target:  5'- gGCUCUcucgccGCGGcGGCCg-GCGggGCGCg -3'
miRNA:   3'- gCGAGAa-----UGCU-CCGGgaCGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 80191 0.73 0.651919
Target:  5'- cCGcCUCUgcggGCGGGuGCgCC-GCGAAGCGCa -3'
miRNA:   3'- -GC-GAGAa---UGCUC-CG-GGaCGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 61533 0.73 0.651919
Target:  5'- aGgUC--ACGGGGCUCUGCGAGcCGCc -3'
miRNA:   3'- gCgAGaaUGCUCCGGGACGCUUuGCG- -5'
6677 3' -53.9 NC_001847.1 + 112554 0.73 0.641508
Target:  5'- aCGCgacCggGCG-GGCCCUGCcccGggGCGCc -3'
miRNA:   3'- -GCGa--GaaUGCuCCGGGACG---CuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 90837 0.73 0.641508
Target:  5'- cCGCUCUgGCGcuGGCCCgccGCGccGCGCc -3'
miRNA:   3'- -GCGAGAaUGCu-CCGGGa--CGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 18170 0.73 0.641508
Target:  5'- aCGCUCgccccaGCG-GGCCCaugGCGGAcGCGCg -3'
miRNA:   3'- -GCGAGaa----UGCuCCGGGa--CGCUU-UGCG- -5'
6677 3' -53.9 NC_001847.1 + 130465 0.73 0.62067
Target:  5'- gGCUCggAgGAagacccGGCCCUGCucGACGCg -3'
miRNA:   3'- gCGAGaaUgCU------CCGGGACGcuUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 132126 0.74 0.610261
Target:  5'- uGCUCg-GCGcGGCCCgcgacgcgGUGGAGCGCg -3'
miRNA:   3'- gCGAGaaUGCuCCGGGa-------CGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 11847 0.74 0.56887
Target:  5'- gGcCUCUgGCGccGCCCUGCGGgcGGCGCg -3'
miRNA:   3'- gC-GAGAaUGCucCGGGACGCU--UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 33053 0.74 0.562714
Target:  5'- gCGCUCgcggcCGAGGCgCUGCGGcaguacuuucugcgcGGCGCg -3'
miRNA:   3'- -GCGAGaau--GCUCCGgGACGCU---------------UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 133056 0.75 0.548423
Target:  5'- cCGC-CgcGCG-GGCCCcGCGggGCGCu -3'
miRNA:   3'- -GCGaGaaUGCuCCGGGaCGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 70778 0.75 0.528212
Target:  5'- gGCUaguguUUUugGAGGCCCUagaGAAGCGCg -3'
miRNA:   3'- gCGA-----GAAugCUCCGGGAcg-CUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 6089 0.76 0.488679
Target:  5'- gCGCUCgcggaggcGCGAGacGCCC-GCGAGGCGCg -3'
miRNA:   3'- -GCGAGaa------UGCUC--CGGGaCGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 76168 0.76 0.47901
Target:  5'- --gUCUUGCccgcgGAuGCCCUGCGAGACGCa -3'
miRNA:   3'- gcgAGAAUG-----CUcCGGGACGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 94224 0.76 0.469436
Target:  5'- aGCUCgcgGCGGGGCgCCcGCGcgGCGCc -3'
miRNA:   3'- gCGAGaa-UGCUCCG-GGaCGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 66316 0.79 0.346312
Target:  5'- aGCUCUUcGCGGcGCCCUGCGGcggguggGGCGCg -3'
miRNA:   3'- gCGAGAA-UGCUcCGGGACGCU-------UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 118199 1.13 0.002257
Target:  5'- cCGCUCUUACGAGGCCCUGCGAAACGCa -3'
miRNA:   3'- -GCGAGAAUGCUCCGGGACGCUUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.