miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 3' -53.9 NC_001847.1 + 61737 0.66 0.958628
Target:  5'- cCGgUCgccgUACGAGuGUCgCUGCGAGGCcCa -3'
miRNA:   3'- -GCgAGa---AUGCUC-CGG-GACGCUUUGcG- -5'
6677 3' -53.9 NC_001847.1 + 68849 0.66 0.946372
Target:  5'- aGCUCgggcGCGAGGCg--GCGGcguGCGCc -3'
miRNA:   3'- gCGAGaa--UGCUCCGggaCGCUu--UGCG- -5'
6677 3' -53.9 NC_001847.1 + 60515 0.66 0.941806
Target:  5'- cCGcCUCgcGCGAGGCgCUGCccAGCuGCa -3'
miRNA:   3'- -GC-GAGaaUGCUCCGgGACGcuUUG-CG- -5'
6677 3' -53.9 NC_001847.1 + 118127 0.81 0.255473
Target:  5'- gGCg---GCGAGGCCguCUGCGAGGCGCg -3'
miRNA:   3'- gCGagaaUGCUCCGG--GACGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 95777 0.66 0.954779
Target:  5'- cCGCUCUggcGCGGGGggCgGCGcGGGCGCa -3'
miRNA:   3'- -GCGAGAa--UGCUCCggGaCGC-UUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 125193 0.66 0.954779
Target:  5'- uGCUCUUugGgGGGUCCgaGUcccAGACGCu -3'
miRNA:   3'- gCGAGAAugC-UCCGGGa-CGc--UUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 72806 0.66 0.954779
Target:  5'- gCGCUCUUuguggcggcauCGGGGCCaugGCGcucGGGCGUu -3'
miRNA:   3'- -GCGAGAAu----------GCUCCGGga-CGC---UUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 3249 0.66 0.954779
Target:  5'- uGCUCgccgGCGgcagGGGCgCCgGCGccGCGCg -3'
miRNA:   3'- gCGAGaa--UGC----UCCG-GGaCGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 101310 0.66 0.950695
Target:  5'- gCGCUC-UGCGc-GCCC-GCGucuGCGCa -3'
miRNA:   3'- -GCGAGaAUGCucCGGGaCGCuu-UGCG- -5'
6677 3' -53.9 NC_001847.1 + 96416 0.66 0.946372
Target:  5'- gGCaaugGCGGGGCCg-GCGGcaGGCGCg -3'
miRNA:   3'- gCGagaaUGCUCCGGgaCGCU--UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 50534 0.66 0.946372
Target:  5'- cCGCUCgaagGCGAcgcagcGGCgCUGCuGGAcCGCg -3'
miRNA:   3'- -GCGAGaa--UGCU------CCGgGACG-CUUuGCG- -5'
6677 3' -53.9 NC_001847.1 + 128147 0.66 0.951114
Target:  5'- cCGCUCgucGCGuuuuaucugcugggcGGCCCgccggGCgGAAGCGCc -3'
miRNA:   3'- -GCGAGaa-UGCu--------------CCGGGa----CG-CUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 78843 0.66 0.958628
Target:  5'- gCGCUCcgGCGAGuagcugguguGCUC-GCGguGCGCg -3'
miRNA:   3'- -GCGAGaaUGCUC----------CGGGaCGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 42995 0.66 0.946372
Target:  5'- uCGCUgUcgGCG-GGCCCcGCGGAcgGCGg -3'
miRNA:   3'- -GCGAgAa-UGCuCCGGGaCGCUU--UGCg -5'
6677 3' -53.9 NC_001847.1 + 51990 0.66 0.958628
Target:  5'- gGCg-UUGgGAGGUcgCCggGCGGGACGCa -3'
miRNA:   3'- gCGagAAUgCUCCG--GGa-CGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 113616 0.66 0.954381
Target:  5'- aGCUUggGCGcguuGGCCCgcgcgGCccccgccGAGGCGCg -3'
miRNA:   3'- gCGAGaaUGCu---CCGGGa----CG-------CUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 115851 0.66 0.946372
Target:  5'- gCGCUCguuugUugGcGGCCCgccGCacAGACGCu -3'
miRNA:   3'- -GCGAGa----AugCuCCGGGa--CGc-UUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 116587 0.66 0.945926
Target:  5'- gCGCUCUggGCGcAGcgcugccGCUCUGCG--GCGCg -3'
miRNA:   3'- -GCGAGAa-UGC-UC-------CGGGACGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 19374 0.66 0.956347
Target:  5'- aCGCUCUggcCGAgccggcuccccgcucGGCUCcGCGGcGACGCa -3'
miRNA:   3'- -GCGAGAau-GCU---------------CCGGGaCGCU-UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 83013 0.66 0.954779
Target:  5'- uGCUgaUGCuGAGGCCCagcacuaccGCGGGcCGCg -3'
miRNA:   3'- gCGAgaAUG-CUCCGGGa--------CGCUUuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.