miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 3' -53.9 NC_001847.1 + 13271 0.66 0.946372
Target:  5'- uGCUgacUGCGGugccGGCCCUGUGc-GCGCg -3'
miRNA:   3'- gCGAga-AUGCU----CCGGGACGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 12017 0.66 0.936995
Target:  5'- cCGUUCcaGCGccccucuGCCCgGCGGAGCGCu -3'
miRNA:   3'- -GCGAGaaUGCuc-----CGGGaCGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 8118 0.66 0.945926
Target:  5'- gCGCaggcGCGGGGCCCcagggGCGGGcggugcuGCGCg -3'
miRNA:   3'- -GCGagaaUGCUCCGGGa----CGCUU-------UGCG- -5'
6677 3' -53.9 NC_001847.1 + 69403 0.66 0.941806
Target:  5'- gGCcUUUGCG-GGCCCggcgcuguuccUGCGGcucAGCGCg -3'
miRNA:   3'- gCGaGAAUGCuCCGGG-----------ACGCU---UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 74260 0.66 0.936995
Target:  5'- cCGCcgCUgcUGGGGCCC-GCGc-GCGCg -3'
miRNA:   3'- -GCGa-GAauGCUCCGGGaCGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 111063 0.66 0.936995
Target:  5'- aGCUCUcACGAccGuGCCC-GUGAGaACGCu -3'
miRNA:   3'- gCGAGAaUGCU--C-CGGGaCGCUU-UGCG- -5'
6677 3' -53.9 NC_001847.1 + 40491 0.66 0.950695
Target:  5'- -cCUCUUGCugGAGG-CCUGCGAAAaaauUGCc -3'
miRNA:   3'- gcGAGAAUG--CUCCgGGACGCUUU----GCG- -5'
6677 3' -53.9 NC_001847.1 + 124894 0.66 0.941806
Target:  5'- gGCUCcgaaaaGCG-GGCCCgGC-AGGCGCg -3'
miRNA:   3'- gCGAGaa----UGCuCCGGGaCGcUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 82291 0.66 0.938949
Target:  5'- aCGC-CUUGCugGAGcugguguuaaccggcGCCC-GCGAAACGCc -3'
miRNA:   3'- -GCGaGAAUG--CUC---------------CGGGaCGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 104240 0.66 0.936995
Target:  5'- cCGCgg-UGCGcGGGCCCagGCGcGugGCc -3'
miRNA:   3'- -GCGagaAUGC-UCCGGGa-CGCuUugCG- -5'
6677 3' -53.9 NC_001847.1 + 34104 0.66 0.936995
Target:  5'- gGCUCgcGCGGcGGCggagCCUGCG--GCGCc -3'
miRNA:   3'- gCGAGaaUGCU-CCG----GGACGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 38414 0.66 0.941806
Target:  5'- uGCUCUcgcUugGGGGgCC-GaCGAGugGCu -3'
miRNA:   3'- gCGAGA---AugCUCCgGGaC-GCUUugCG- -5'
6677 3' -53.9 NC_001847.1 + 54565 0.66 0.950273
Target:  5'- gCGCggaggACGAcGGCCCcGCGGgcugggcGGCGCu -3'
miRNA:   3'- -GCGagaa-UGCU-CCGGGaCGCU-------UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 131970 0.66 0.941806
Target:  5'- uCGC-CUgccGCGAGGCgCUG-GAGGCGg -3'
miRNA:   3'- -GCGaGAa--UGCUCCGgGACgCUUUGCg -5'
6677 3' -53.9 NC_001847.1 + 82084 0.66 0.941806
Target:  5'- gCGCgUCUgACGccgucgccggaGGGCgCCUGCGuuuGCGCc -3'
miRNA:   3'- -GCG-AGAaUGC-----------UCCG-GGACGCuu-UGCG- -5'
6677 3' -53.9 NC_001847.1 + 64336 0.66 0.941806
Target:  5'- gCGCUCg-GCGGauccccucccGGCCCcgccGCGAAGCGa -3'
miRNA:   3'- -GCGAGaaUGCU----------CCGGGa---CGCUUUGCg -5'
6677 3' -53.9 NC_001847.1 + 70471 0.66 0.936995
Target:  5'- aCGC----GCGGGcGCCCgGUGGAugGCg -3'
miRNA:   3'- -GCGagaaUGCUC-CGGGaCGCUUugCG- -5'
6677 3' -53.9 NC_001847.1 + 32427 0.66 0.950695
Target:  5'- cCGCUUUUcgggGCGGuGGCCCagGCGcuGcCGCa -3'
miRNA:   3'- -GCGAGAA----UGCU-CCGGGa-CGCuuU-GCG- -5'
6677 3' -53.9 NC_001847.1 + 87453 0.66 0.946372
Target:  5'- gCGCUCaac---GGCCCcGCGgcGCGCg -3'
miRNA:   3'- -GCGAGaaugcuCCGGGaCGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 78823 0.66 0.941336
Target:  5'- uCGCcUUUACGGccuucgcGGCCCgccGCGcGACGCc -3'
miRNA:   3'- -GCGaGAAUGCU-------CCGGGa--CGCuUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.