miRNA display CGI


Results 21 - 40 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 3' -53.9 NC_001847.1 + 74260 0.66 0.936995
Target:  5'- cCGCcgCUgcUGGGGCCC-GCGc-GCGCg -3'
miRNA:   3'- -GCGa-GAauGCUCCGGGaCGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 80096 0.66 0.950695
Target:  5'- cCGCgcg-ACGAacgcGGCcaCCUGCGcAAACGCg -3'
miRNA:   3'- -GCGagaaUGCU----CCG--GGACGC-UUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 8118 0.66 0.945926
Target:  5'- gCGCaggcGCGGGGCCCcagggGCGGGcggugcuGCGCg -3'
miRNA:   3'- -GCGagaaUGCUCCGGGa----CGCUU-------UGCG- -5'
6677 3' -53.9 NC_001847.1 + 124894 0.66 0.941806
Target:  5'- gGCUCcgaaaaGCG-GGCCCgGC-AGGCGCg -3'
miRNA:   3'- gCGAGaa----UGCuCCGGGaCGcUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 56878 0.66 0.954779
Target:  5'- gCGCggccACG-GGCCCgccgGCGAcggcGACGCc -3'
miRNA:   3'- -GCGagaaUGCuCCGGGa---CGCU----UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 82084 0.66 0.941806
Target:  5'- gCGCgUCUgACGccgucgccggaGGGCgCCUGCGuuuGCGCc -3'
miRNA:   3'- -GCG-AGAaUGC-----------UCCG-GGACGCuu-UGCG- -5'
6677 3' -53.9 NC_001847.1 + 115565 0.66 0.950695
Target:  5'- aCGCUUaagUACG-GGCCgCgGCGAu-CGCg -3'
miRNA:   3'- -GCGAGa--AUGCuCCGG-GaCGCUuuGCG- -5'
6677 3' -53.9 NC_001847.1 + 36078 0.66 0.958628
Target:  5'- gCGCgCUggacGCGcGGCUg-GCGGAGCGCg -3'
miRNA:   3'- -GCGaGAa---UGCuCCGGgaCGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 73784 0.66 0.958254
Target:  5'- aCGcCUCgccggUGCGGGGCugCCUGcCGGugggcuaGGCGCg -3'
miRNA:   3'- -GC-GAGa----AUGCUCCG--GGAC-GCU-------UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 106062 0.66 0.954779
Target:  5'- uGCUCgccgGCGgcagGGGCgCCgGCGccGCGCg -3'
miRNA:   3'- gCGAGaa--UGC----UCCG-GGaCGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 119611 0.66 0.954779
Target:  5'- gGCgacgACGAGGCCC-GCGAGgAUGa -3'
miRNA:   3'- gCGagaaUGCUCCGGGaCGCUU-UGCg -5'
6677 3' -53.9 NC_001847.1 + 78823 0.66 0.941336
Target:  5'- uCGCcUUUACGGccuucgcGGCCCgccGCGcGACGCc -3'
miRNA:   3'- -GCGaGAAUGCU-------CCGGGa--CGCuUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 12017 0.66 0.936995
Target:  5'- cCGUUCcaGCGccccucuGCCCgGCGGAGCGCu -3'
miRNA:   3'- -GCGAGaaUGCuc-----CGGGaCGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 48892 0.66 0.958628
Target:  5'- gCGCggggGCGAGuGCCCUGUu---CGCa -3'
miRNA:   3'- -GCGagaaUGCUC-CGGGACGcuuuGCG- -5'
6677 3' -53.9 NC_001847.1 + 6749 0.66 0.958628
Target:  5'- gGCgUCgucUGCGGugcGGCCggUGCGAGGCGCc -3'
miRNA:   3'- gCG-AGa--AUGCU---CCGGg-ACGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 82158 0.66 0.954779
Target:  5'- -aUUgUUAUG-GGCCaCUGCGcGACGCg -3'
miRNA:   3'- gcGAgAAUGCuCCGG-GACGCuUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 96200 0.66 0.954779
Target:  5'- gCGCUCgcgGCccccGGGCCCggGaCGAcGACGCu -3'
miRNA:   3'- -GCGAGaa-UGc---UCCGGGa-C-GCU-UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 33871 0.66 0.958628
Target:  5'- gCGCuUCUUGCagGAGGCgCCgccGCGcGugGCc -3'
miRNA:   3'- -GCG-AGAAUG--CUCCG-GGa--CGCuUugCG- -5'
6677 3' -53.9 NC_001847.1 + 35204 0.66 0.958628
Target:  5'- gCGCgCgcgGCuGGGcGCCCUGCGcgcGGACGUg -3'
miRNA:   3'- -GCGaGaa-UG-CUC-CGGGACGC---UUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 121862 0.66 0.954779
Target:  5'- uGCUUcaccgACGuGGCCCUG---GACGCg -3'
miRNA:   3'- gCGAGaa---UGCuCCGGGACgcuUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.