miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6678 3' -56 NC_001847.1 + 117081 0.68 0.818258
Target:  5'- gGUAGCCCCGG--GGGUu----UCCCg -3'
miRNA:   3'- -CGUCGGGGCCgaCCCAuauauAGGGg -5'
6678 3' -56 NC_001847.1 + 72044 0.69 0.763454
Target:  5'- gGCGGCCCCGG--GGcGUAcccgGUCCCg -3'
miRNA:   3'- -CGUCGGGGCCgaCC-CAUaua-UAGGGg -5'
6678 3' -56 NC_001847.1 + 12989 0.68 0.772936
Target:  5'- uGCAGUaCCGGCUGGGgGUGgggggCCUg -3'
miRNA:   3'- -CGUCGgGGCCGACCCaUAUaua--GGGg -5'
6678 3' -56 NC_001847.1 + 24351 0.68 0.791509
Target:  5'- cGCGGCCUuuuCGGUaGGGUAc-UGUCCgCCu -3'
miRNA:   3'- -CGUCGGG---GCCGaCCCAUauAUAGG-GG- -5'
6678 3' -56 NC_001847.1 + 77933 0.68 0.809502
Target:  5'- -gAGCCCCGGCggccGGGgc---GUCCUg -3'
miRNA:   3'- cgUCGGGGCCGa---CCCauauaUAGGGg -5'
6678 3' -56 NC_001847.1 + 27402 0.68 0.809502
Target:  5'- uGCAGCaucccgCCGGCccaaGGGU-UGUAgCCCCg -3'
miRNA:   3'- -CGUCGg-----GGCCGa---CCCAuAUAUaGGGG- -5'
6678 3' -56 NC_001847.1 + 114811 0.68 0.818258
Target:  5'- gGguGCCCUGGC--GGUAcaugGUCCCUc -3'
miRNA:   3'- -CguCGGGGCCGacCCAUaua-UAGGGG- -5'
6678 3' -56 NC_001847.1 + 124479 0.68 0.818258
Target:  5'- gGCgAGCCCCccGGCgacGGGUAUGgcgagGagCCCg -3'
miRNA:   3'- -CG-UCGGGG--CCGa--CCCAUAUa----UagGGG- -5'
6678 3' -56 NC_001847.1 + 59125 0.68 0.818258
Target:  5'- cGCcGCUCCGGCcgcgcGGGUG---GUCCCa -3'
miRNA:   3'- -CGuCGGGGCCGa----CCCAUauaUAGGGg -5'
6678 3' -56 NC_001847.1 + 108170 0.69 0.72444
Target:  5'- cCGGCCgCGGCUGGaUGUcUGUCUCUc -3'
miRNA:   3'- cGUCGGgGCCGACCcAUAuAUAGGGG- -5'
6678 3' -56 NC_001847.1 + 111294 0.7 0.71045
Target:  5'- gGCGGCgCUCGGCcGGGggcggggCCCCu -3'
miRNA:   3'- -CGUCG-GGGCCGaCCCauauauaGGGG- -5'
6678 3' -56 NC_001847.1 + 44293 0.7 0.700375
Target:  5'- cCAGCCCCGGCcccGGGgcgccgcucgcugAUcUcgCCCCg -3'
miRNA:   3'- cGUCGGGGCCGa--CCCa------------UAuAuaGGGG- -5'
6678 3' -56 NC_001847.1 + 8710 0.74 0.454188
Target:  5'- aCGGCCaCGGCUGGugggcggggcauGUGUGUGUCaCCCg -3'
miRNA:   3'- cGUCGGgGCCGACC------------CAUAUAUAG-GGG- -5'
6678 3' -56 NC_001847.1 + 12282 0.73 0.501629
Target:  5'- aGCGcGCCCCGGaaGGGg--GUG-CCCCg -3'
miRNA:   3'- -CGU-CGGGGCCgaCCCauaUAUaGGGG- -5'
6678 3' -56 NC_001847.1 + 105047 0.73 0.531116
Target:  5'- cGCGGCgCUgGGCgcgGGcGUGUGguaGUCCCCg -3'
miRNA:   3'- -CGUCG-GGgCCGa--CC-CAUAUa--UAGGGG- -5'
6678 3' -56 NC_001847.1 + 124596 0.73 0.531116
Target:  5'- cCGGCgCCGGCcGGGcgcggGUCCCCg -3'
miRNA:   3'- cGUCGgGGCCGaCCCauauaUAGGGG- -5'
6678 3' -56 NC_001847.1 + 41833 0.73 0.541087
Target:  5'- cGCgGGUCCCagGGCUGGGgcac-GUCCCCc -3'
miRNA:   3'- -CG-UCGGGG--CCGACCCauauaUAGGGG- -5'
6678 3' -56 NC_001847.1 + 102242 0.73 0.541087
Target:  5'- cGCGGCCCCGGCU---------UCCCCg -3'
miRNA:   3'- -CGUCGGGGCCGAcccauauauAGGGG- -5'
6678 3' -56 NC_001847.1 + 100662 0.71 0.632846
Target:  5'- cGCuGCUgCGGCgGGGg----GUCCCCa -3'
miRNA:   3'- -CGuCGGgGCCGaCCCauauaUAGGGG- -5'
6678 3' -56 NC_001847.1 + 134263 0.7 0.673932
Target:  5'- gGCGGCCCCGGCgcgGGccgccgccgcgcGUGgagGUGcUCUCCu -3'
miRNA:   3'- -CGUCGGGGCCGa--CC------------CAUa--UAU-AGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.