Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6678 | 3' | -56 | NC_001847.1 | + | 8710 | 0.74 | 0.454188 |
Target: 5'- aCGGCCaCGGCUGGugggcggggcauGUGUGUGUCaCCCg -3' miRNA: 3'- cGUCGGgGCCGACC------------CAUAUAUAG-GGG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 59125 | 0.68 | 0.818258 |
Target: 5'- cGCcGCUCCGGCcgcgcGGGUG---GUCCCa -3' miRNA: 3'- -CGuCGGGGCCGa----CCCAUauaUAGGGg -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 124479 | 0.68 | 0.818258 |
Target: 5'- gGCgAGCCCCccGGCgacGGGUAUGgcgagGagCCCg -3' miRNA: 3'- -CG-UCGGGG--CCGa--CCCAUAUa----UagGGG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 114811 | 0.68 | 0.818258 |
Target: 5'- gGguGCCCUGGC--GGUAcaugGUCCCUc -3' miRNA: 3'- -CguCGGGGCCGacCCAUaua-UAGGGG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 27402 | 0.68 | 0.809502 |
Target: 5'- uGCAGCaucccgCCGGCccaaGGGU-UGUAgCCCCg -3' miRNA: 3'- -CGUCGg-----GGCCGa---CCCAuAUAUaGGGG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 77933 | 0.68 | 0.809502 |
Target: 5'- -gAGCCCCGGCggccGGGgc---GUCCUg -3' miRNA: 3'- cgUCGGGGCCGa---CCCauauaUAGGGg -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 24351 | 0.68 | 0.791509 |
Target: 5'- cGCGGCCUuuuCGGUaGGGUAc-UGUCCgCCu -3' miRNA: 3'- -CGUCGGG---GCCGaCCCAUauAUAGG-GG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 12989 | 0.68 | 0.772936 |
Target: 5'- uGCAGUaCCGGCUGGGgGUGgggggCCUg -3' miRNA: 3'- -CGUCGgGGCCGACCCaUAUaua--GGGg -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 72044 | 0.69 | 0.763454 |
Target: 5'- gGCGGCCCCGG--GGcGUAcccgGUCCCg -3' miRNA: 3'- -CGUCGGGGCCgaCC-CAUaua-UAGGGg -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 108170 | 0.69 | 0.72444 |
Target: 5'- cCGGCCgCGGCUGGaUGUcUGUCUCUc -3' miRNA: 3'- cGUCGGgGCCGACCcAUAuAUAGGGG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 111294 | 0.7 | 0.71045 |
Target: 5'- gGCGGCgCUCGGCcGGGggcggggCCCCu -3' miRNA: 3'- -CGUCG-GGGCCGaCCCauauauaGGGG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 44293 | 0.7 | 0.700375 |
Target: 5'- cCAGCCCCGGCcccGGGgcgccgcucgcugAUcUcgCCCCg -3' miRNA: 3'- cGUCGGGGCCGa--CCCa------------UAuAuaGGGG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 134263 | 0.7 | 0.673932 |
Target: 5'- gGCGGCCCCGGCgcgGGccgccgccgcgcGUGgagGUGcUCUCCu -3' miRNA: 3'- -CGUCGGGGCCGa--CC------------CAUa--UAU-AGGGG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 100662 | 0.71 | 0.632846 |
Target: 5'- cGCuGCUgCGGCgGGGg----GUCCCCa -3' miRNA: 3'- -CGuCGGgGCCGaCCCauauaUAGGGG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 102242 | 0.73 | 0.541087 |
Target: 5'- cGCGGCCCCGGCU---------UCCCCg -3' miRNA: 3'- -CGUCGGGGCCGAcccauauauAGGGG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 41833 | 0.73 | 0.541087 |
Target: 5'- cGCgGGUCCCagGGCUGGGgcac-GUCCCCc -3' miRNA: 3'- -CG-UCGGGG--CCGACCCauauaUAGGGG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 124596 | 0.73 | 0.531116 |
Target: 5'- cCGGCgCCGGCcGGGcgcggGUCCCCg -3' miRNA: 3'- cGUCGgGGCCGaCCCauauaUAGGGG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 105047 | 0.73 | 0.531116 |
Target: 5'- cGCGGCgCUgGGCgcgGGcGUGUGguaGUCCCCg -3' miRNA: 3'- -CGUCG-GGgCCGa--CC-CAUAUa--UAGGGG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 12282 | 0.73 | 0.501629 |
Target: 5'- aGCGcGCCCCGGaaGGGg--GUG-CCCCg -3' miRNA: 3'- -CGU-CGGGGCCgaCCCauaUAUaGGGG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 118698 | 1.15 | 0.001055 |
Target: 5'- cGCAGCCCCGGCUGGGUAUAUAUCCCCg -3' miRNA: 3'- -CGUCGGGGCCGACCCAUAUAUAGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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