miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6678 3' -56 NC_001847.1 + 149 0.67 0.858545
Target:  5'- -gGGCCCCGGCcgGGGggccgggGUucugcgucuuggcCCCCg -3'
miRNA:   3'- cgUCGGGGCCGa-CCCauaua--UA-------------GGGG- -5'
6678 3' -56 NC_001847.1 + 2234 0.73 0.531116
Target:  5'- cGCGGCgCUgGGCgcgGGcGUGUGguaGUCCCCg -3'
miRNA:   3'- -CGUCG-GGgCCGa--CC-CAUAUa--UAGGGG- -5'
6678 3' -56 NC_001847.1 + 3776 0.67 0.826843
Target:  5'- aGCAGCCCgGGC-GGG-AUGUG-CUgCa -3'
miRNA:   3'- -CGUCGGGgCCGaCCCaUAUAUaGGgG- -5'
6678 3' -56 NC_001847.1 + 4084 0.66 0.89521
Target:  5'- uCGGCCUCGGCcucagcgucGGcGUcgGUGcUCCCCu -3'
miRNA:   3'- cGUCGGGGCCGa--------CC-CAuaUAU-AGGGG- -5'
6678 3' -56 NC_001847.1 + 5357 0.69 0.72444
Target:  5'- cCGGCCgCGGCUGGaUGUcUGUCUCUc -3'
miRNA:   3'- cGUCGGgGCCGACCcAUAuAUAGGGG- -5'
6678 3' -56 NC_001847.1 + 6985 0.66 0.901068
Target:  5'- aUAGCUugCCGGCgUGGGUAguuUGUAUaugcacacccgcgCCCCu -3'
miRNA:   3'- cGUCGG--GGCCG-ACCCAU---AUAUA-------------GGGG- -5'
6678 3' -56 NC_001847.1 + 7822 0.67 0.859318
Target:  5'- gGCcGCCUCGGCgccGGUcgccGUGUCUCCg -3'
miRNA:   3'- -CGuCGGGGCCGac-CCAua--UAUAGGGG- -5'
6678 3' -56 NC_001847.1 + 8481 0.7 0.71045
Target:  5'- gGCGGCgCUCGGCcGGGggcggggCCCCu -3'
miRNA:   3'- -CGUCG-GGGCCGaCCCauauauaGGGG- -5'
6678 3' -56 NC_001847.1 + 8710 0.74 0.454188
Target:  5'- aCGGCCaCGGCUGGugggcggggcauGUGUGUGUCaCCCg -3'
miRNA:   3'- cGUCGGgGCCGACC------------CAUAUAUAG-GGG- -5'
6678 3' -56 NC_001847.1 + 8737 0.66 0.877236
Target:  5'- cCAGCCCCGGCaaaggcaaGGUAagcgcauccgCCCCg -3'
miRNA:   3'- cGUCGGGGCCGac------CCAUauaua-----GGGG- -5'
6678 3' -56 NC_001847.1 + 11541 0.66 0.902344
Target:  5'- uGCcGCCuuGGCUGGGcuugcaaagCCCg -3'
miRNA:   3'- -CGuCGGggCCGACCCauauaua--GGGg -5'
6678 3' -56 NC_001847.1 + 11586 0.66 0.889162
Target:  5'- gGCGGCCCCGGCccaag------CCCCg -3'
miRNA:   3'- -CGUCGGGGCCGacccauauauaGGGG- -5'
6678 3' -56 NC_001847.1 + 12282 0.73 0.501629
Target:  5'- aGCGcGCCCCGGaaGGGg--GUG-CCCCg -3'
miRNA:   3'- -CGU-CGGGGCCgaCCCauaUAUaGGGG- -5'
6678 3' -56 NC_001847.1 + 12989 0.68 0.772936
Target:  5'- uGCAGUaCCGGCUGGGgGUGgggggCCUg -3'
miRNA:   3'- -CGUCGgGGCCGACCCaUAUaua--GGGg -5'
6678 3' -56 NC_001847.1 + 13955 0.66 0.893882
Target:  5'- uGCGGCUgCGGCccgUGGGagcccg-CCCCu -3'
miRNA:   3'- -CGUCGGgGCCG---ACCCauauauaGGGG- -5'
6678 3' -56 NC_001847.1 + 16245 0.66 0.887105
Target:  5'- uCGGCCCCGGCcccGGccccgg-CCCCg -3'
miRNA:   3'- cGUCGGGGCCGac-CCauauauaGGGG- -5'
6678 3' -56 NC_001847.1 + 16402 0.67 0.843469
Target:  5'- cGCAGCagCCGcGCgGGGcgaGUGUAUCUCUa -3'
miRNA:   3'- -CGUCGg-GGC-CGaCCCa--UAUAUAGGGG- -5'
6678 3' -56 NC_001847.1 + 21068 0.67 0.83525
Target:  5'- -aGGCCCUggGGCgGGGcccgacUGUCCCCu -3'
miRNA:   3'- cgUCGGGG--CCGaCCCauau--AUAGGGG- -5'
6678 3' -56 NC_001847.1 + 21666 0.68 0.818258
Target:  5'- gGCgAGCCCCccGGCgacGGGUAUGgcgagGagCCCg -3'
miRNA:   3'- -CG-UCGGGG--CCGa--CCCAUAUa----UagGGG- -5'
6678 3' -56 NC_001847.1 + 21783 0.73 0.531116
Target:  5'- cCGGCgCCGGCcGGGcgcggGUCCCCg -3'
miRNA:   3'- cGUCGgGGCCGaCCCauauaUAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.