miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6678 3' -56 NC_001847.1 + 22856 0.66 0.901708
Target:  5'- cGCGGUCCUGGguuucagcuCUGGGgg-GUcgCCgCCg -3'
miRNA:   3'- -CGUCGGGGCC---------GACCCauaUAuaGG-GG- -5'
6678 3' -56 NC_001847.1 + 24351 0.68 0.791509
Target:  5'- cGCGGCCUuuuCGGUaGGGUAc-UGUCCgCCu -3'
miRNA:   3'- -CGUCGGG---GCCGaCCCAUauAUAGG-GG- -5'
6678 3' -56 NC_001847.1 + 27402 0.68 0.809502
Target:  5'- uGCAGCaucccgCCGGCccaaGGGU-UGUAgCCCCg -3'
miRNA:   3'- -CGUCGg-----GGCCGa---CCCAuAUAUaGGGG- -5'
6678 3' -56 NC_001847.1 + 28307 0.66 0.871401
Target:  5'- aGCGGCCCCgcgagaggcgGGCgccGGGcccggcgCCCCg -3'
miRNA:   3'- -CGUCGGGG----------CCGa--CCCauauauaGGGG- -5'
6678 3' -56 NC_001847.1 + 31450 0.7 0.673932
Target:  5'- gGCGGCCCCGGCgcgGGccgccgccgcgcGUGgagGUGcUCUCCu -3'
miRNA:   3'- -CGUCGGGGCCGa--CC------------CAUa--UAU-AGGGG- -5'
6678 3' -56 NC_001847.1 + 32065 0.67 0.858545
Target:  5'- gGCGGCCCCcgGGCUcGGG-------CCCCu -3'
miRNA:   3'- -CGUCGGGG--CCGA-CCCauauauaGGGG- -5'
6678 3' -56 NC_001847.1 + 32533 0.7 0.704413
Target:  5'- aGCGGCgCCCGGuCUGuuGUuUGUGUCgCCCa -3'
miRNA:   3'- -CGUCG-GGGCC-GACc-CAuAUAUAG-GGG- -5'
6678 3' -56 NC_001847.1 + 34098 0.68 0.790594
Target:  5'- cCGGCCUCGGC-GGGUGcgcaaauUGggaCCCCg -3'
miRNA:   3'- cGUCGGGGCCGaCCCAU-------AUauaGGGG- -5'
6678 3' -56 NC_001847.1 + 36085 0.68 0.782291
Target:  5'- gGCGGCCCCGGgcCUGGcGggcauuuuUAUCCgCg -3'
miRNA:   3'- -CGUCGGGGCC--GACC-Cauau----AUAGGgG- -5'
6678 3' -56 NC_001847.1 + 36420 0.66 0.870662
Target:  5'- cCGGCCCCGGCUucGGccccggcuucggCCCCg -3'
miRNA:   3'- cGUCGGGGCCGA--CCcauauaua----GGGG- -5'
6678 3' -56 NC_001847.1 + 36456 0.66 0.885028
Target:  5'- uCGGCCCCGGCUucGGccccggcuucggCCCCg -3'
miRNA:   3'- cGUCGGGGCCGA--CCcauauaua----GGGG- -5'
6678 3' -56 NC_001847.1 + 40243 0.76 0.37542
Target:  5'- cCAGCCCCGGCUGGcccGUGgcgGUgcgguaGUCCUCg -3'
miRNA:   3'- cGUCGGGGCCGACC---CAUa--UA------UAGGGG- -5'
6678 3' -56 NC_001847.1 + 41833 0.73 0.541087
Target:  5'- cGCgGGUCCCagGGCUGGGgcac-GUCCCCc -3'
miRNA:   3'- -CG-UCGGGG--CCGACCCauauaUAGGGG- -5'
6678 3' -56 NC_001847.1 + 43957 0.68 0.809502
Target:  5'- uGCuGCCguaCCGGCUGGccuUGUGccgCCCCa -3'
miRNA:   3'- -CGuCGG---GGCCGACCcauAUAUa--GGGG- -5'
6678 3' -56 NC_001847.1 + 44293 0.7 0.700375
Target:  5'- cCAGCCCCGGCcccGGGgcgccgcucgcugAUcUcgCCCCg -3'
miRNA:   3'- cGUCGGGGCCGa--CCCa------------UAuAuaGGGG- -5'
6678 3' -56 NC_001847.1 + 46923 0.67 0.853862
Target:  5'- uCGGCUCCGGCgaggcgcuuuUGGGUGUccggcagcagaaagCCCCg -3'
miRNA:   3'- cGUCGGGGCCG----------ACCCAUAuaua----------GGGG- -5'
6678 3' -56 NC_001847.1 + 50923 0.67 0.825993
Target:  5'- gGCGGCCCCGGCcgucaGGGccugcagGUcgucgaggcugaaGUCCUCa -3'
miRNA:   3'- -CGUCGGGGCCGa----CCCaua----UA-------------UAGGGG- -5'
6678 3' -56 NC_001847.1 + 52673 0.67 0.84184
Target:  5'- gGCGGCCCCguGGCcGGGgccggg-CCCg -3'
miRNA:   3'- -CGUCGGGG--CCGaCCCauauauaGGGg -5'
6678 3' -56 NC_001847.1 + 59125 0.68 0.818258
Target:  5'- cGCcGCUCCGGCcgcgcGGGUG---GUCCCa -3'
miRNA:   3'- -CGuCGGGGCCGa----CCCAUauaUAGGGg -5'
6678 3' -56 NC_001847.1 + 59282 0.66 0.875065
Target:  5'- -gAGCCCCGGCggcGGGaaaccguaCCCa -3'
miRNA:   3'- cgUCGGGGCCGa--CCCauauauagGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.