Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6678 | 3' | -56 | NC_001847.1 | + | 106578 | 0.69 | 0.753854 |
Target: 5'- cCAGCCCCGGCgcc----GUGUCCUCg -3' miRNA: 3'- cGUCGGGGCCGacccauaUAUAGGGG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 72591 | 0.69 | 0.757707 |
Target: 5'- cGCGGCCgCGGCggcagaaGGGgcagccgcuUCCCCu -3' miRNA: 3'- -CGUCGGgGCCGa------CCCauauau---AGGGG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 72044 | 0.69 | 0.763454 |
Target: 5'- gGCGGCCCCGG--GGcGUAcccgGUCCCg -3' miRNA: 3'- -CGUCGGGGCCgaCC-CAUaua-UAGGGg -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 12989 | 0.68 | 0.772936 |
Target: 5'- uGCAGUaCCGGCUGGGgGUGgggggCCUg -3' miRNA: 3'- -CGUCGgGGCCGACCCaUAUaua--GGGg -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 120059 | 0.68 | 0.773877 |
Target: 5'- cGCGGCCCC-GCUGccgcaggcgAUCCCCg -3' miRNA: 3'- -CGUCGGGGcCGACccauaua--UAGGGG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 36085 | 0.68 | 0.782291 |
Target: 5'- gGCGGCCCCGGgcCUGGcGggcauuuuUAUCCgCg -3' miRNA: 3'- -CGUCGGGGCC--GACC-Cauau----AUAGGgG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 34098 | 0.68 | 0.790594 |
Target: 5'- cCGGCCUCGGC-GGGUGcgcaaauUGggaCCCCg -3' miRNA: 3'- cGUCGGGGCCGaCCCAU-------AUauaGGGG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 24351 | 0.68 | 0.791509 |
Target: 5'- cGCGGCCUuuuCGGUaGGGUAc-UGUCCgCCu -3' miRNA: 3'- -CGUCGGG---GCCGaCCCAUauAUAGG-GG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 123480 | 0.68 | 0.800583 |
Target: 5'- cGCGGgCUCGGCUGGGg------CCgCCg -3' miRNA: 3'- -CGUCgGGGCCGACCCauauauaGG-GG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 43957 | 0.68 | 0.809502 |
Target: 5'- uGCuGCCguaCCGGCUGGccuUGUGccgCCCCa -3' miRNA: 3'- -CGuCGG---GGCCGACCcauAUAUa--GGGG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 60014 | 0.68 | 0.809502 |
Target: 5'- cCGGCCCCGGC-GGGg------CCCg -3' miRNA: 3'- cGUCGGGGCCGaCCCauauauaGGGg -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 27402 | 0.68 | 0.809502 |
Target: 5'- uGCAGCaucccgCCGGCccaaGGGU-UGUAgCCCCg -3' miRNA: 3'- -CGUCGg-----GGCCGa---CCCAuAUAUaGGGG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 77933 | 0.68 | 0.809502 |
Target: 5'- -gAGCCCCGGCggccGGGgc---GUCCUg -3' miRNA: 3'- cgUCGGGGCCGa---CCCauauaUAGGGg -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 117081 | 0.68 | 0.818258 |
Target: 5'- gGUAGCCCCGG--GGGUu----UCCCg -3' miRNA: 3'- -CGUCGGGGCCgaCCCAuauauAGGGg -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 59125 | 0.68 | 0.818258 |
Target: 5'- cGCcGCUCCGGCcgcgcGGGUG---GUCCCa -3' miRNA: 3'- -CGuCGGGGCCGa----CCCAUauaUAGGGg -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 124479 | 0.68 | 0.818258 |
Target: 5'- gGCgAGCCCCccGGCgacGGGUAUGgcgagGagCCCg -3' miRNA: 3'- -CG-UCGGGG--CCGa--CCCAUAUa----UagGGG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 114811 | 0.68 | 0.818258 |
Target: 5'- gGguGCCCUGGC--GGUAcaugGUCCCUc -3' miRNA: 3'- -CguCGGGGCCGacCCAUaua-UAGGGG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 21666 | 0.68 | 0.818258 |
Target: 5'- gGCgAGCCCCccGGCgacGGGUAUGgcgagGagCCCg -3' miRNA: 3'- -CG-UCGGGG--CCGa--CCCAUAUa----UagGGG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 50923 | 0.67 | 0.825993 |
Target: 5'- gGCGGCCCCGGCcgucaGGGccugcagGUcgucgaggcugaaGUCCUCa -3' miRNA: 3'- -CGUCGGGGCCGa----CCCaua----UA-------------UAGGGG- -5' |
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6678 | 3' | -56 | NC_001847.1 | + | 86732 | 0.67 | 0.826843 |
Target: 5'- cGCGGCCCgCGGa-GGGcgAUGUGUCgCg -3' miRNA: 3'- -CGUCGGG-GCCgaCCCa-UAUAUAGgGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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