miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6678 3' -56 NC_001847.1 + 36420 0.66 0.870662
Target:  5'- cCGGCCCCGGCUucGGccccggcuucggCCCCg -3'
miRNA:   3'- cGUCGGGGCCGA--CCcauauaua----GGGG- -5'
6678 3' -56 NC_001847.1 + 112762 0.66 0.866934
Target:  5'- cGCGaCCCCGGCccgcgGGGgccucGUCCCa -3'
miRNA:   3'- -CGUcGGGGCCGa----CCCauauaUAGGGg -5'
6678 3' -56 NC_001847.1 + 7822 0.67 0.859318
Target:  5'- gGCcGCCUCGGCgccGGUcgccGUGUCUCCg -3'
miRNA:   3'- -CGuCGGGGCCGac-CCAua--UAUAGGGG- -5'
6678 3' -56 NC_001847.1 + 87234 0.67 0.858545
Target:  5'- cCAGCUUCGGCUGGuaccggcugcgCCCCg -3'
miRNA:   3'- cGUCGGGGCCGACCcauauaua---GGGG- -5'
6678 3' -56 NC_001847.1 + 134878 0.67 0.858545
Target:  5'- gGCGGCCCCcgGGCUcGGG-------CCCCu -3'
miRNA:   3'- -CGUCGGGG--CCGA-CCCauauauaGGGG- -5'
6678 3' -56 NC_001847.1 + 149 0.67 0.858545
Target:  5'- -gGGCCCCGGCcgGGGggccgggGUucugcgucuuggcCCCCg -3'
miRNA:   3'- cgUCGGGGCCGa-CCCauaua--UA-------------GGGG- -5'
6678 3' -56 NC_001847.1 + 102962 0.67 0.858545
Target:  5'- -gGGCCCCGGCcgGGGggccgggGUucugcgucuuggcCCCCg -3'
miRNA:   3'- cgUCGGGGCCGa-CCCauaua--UA-------------GGGG- -5'
6678 3' -56 NC_001847.1 + 32065 0.67 0.858545
Target:  5'- gGCGGCCCCcgGGCUcGGG-------CCCCu -3'
miRNA:   3'- -CGUCGGGG--CCGA-CCCauauauaGGGG- -5'
6678 3' -56 NC_001847.1 + 46923 0.67 0.853862
Target:  5'- uCGGCUCCGGCgaggcgcuuuUGGGUGUccggcagcagaaagCCCCg -3'
miRNA:   3'- cGUCGGGGCCG----------ACCCAUAuaua----------GGGG- -5'
6678 3' -56 NC_001847.1 + 59582 0.67 0.843469
Target:  5'- -aAGCUCUGGCUGGcGUGcGcGUCCgCCc -3'
miRNA:   3'- cgUCGGGGCCGACC-CAUaUaUAGG-GG- -5'
6678 3' -56 NC_001847.1 + 16402 0.67 0.843469
Target:  5'- cGCAGCagCCGcGCgGGGcgaGUGUAUCUCUa -3'
miRNA:   3'- -CGUCGg-GGC-CGaCCCa--UAUAUAGGGG- -5'
6678 3' -56 NC_001847.1 + 109798 0.67 0.842655
Target:  5'- uCAGCUugCCGGCgUGGGUAguuUGUAUaugcacacccgcgCCCCu -3'
miRNA:   3'- cGUCGG--GGCCG-ACCCAU---AUAUA-------------GGGG- -5'
6678 3' -56 NC_001847.1 + 52673 0.67 0.84184
Target:  5'- gGCGGCCCCguGGCcGGGgccggg-CCCg -3'
miRNA:   3'- -CGUCGGGG--CCGaCCCauauauaGGGg -5'
6678 3' -56 NC_001847.1 + 123881 0.67 0.83525
Target:  5'- -aGGCCCUggGGCgGGGcccgacUGUCCCCu -3'
miRNA:   3'- cgUCGGGG--CCGaCCCauau--AUAGGGG- -5'
6678 3' -56 NC_001847.1 + 21068 0.67 0.83525
Target:  5'- -aGGCCCUggGGCgGGGcccgacUGUCCCCu -3'
miRNA:   3'- cgUCGGGG--CCGaCCCauau--AUAGGGG- -5'
6678 3' -56 NC_001847.1 + 78301 0.67 0.831909
Target:  5'- cGguGCUCgggCGGCUGGGccgcccccUCCCCg -3'
miRNA:   3'- -CguCGGG---GCCGACCCauauau--AGGGG- -5'
6678 3' -56 NC_001847.1 + 86732 0.67 0.826843
Target:  5'- cGCGGCCCgCGGa-GGGcgAUGUGUCgCg -3'
miRNA:   3'- -CGUCGGG-GCCgaCCCa-UAUAUAGgGg -5'
6678 3' -56 NC_001847.1 + 67959 0.67 0.826843
Target:  5'- aCAGCCgCGGCaGGGg--GUcgCCgCCg -3'
miRNA:   3'- cGUCGGgGCCGaCCCauaUAuaGG-GG- -5'
6678 3' -56 NC_001847.1 + 3776 0.67 0.826843
Target:  5'- aGCAGCCCgGGC-GGG-AUGUG-CUgCa -3'
miRNA:   3'- -CGUCGGGgCCGaCCCaUAUAUaGGgG- -5'
6678 3' -56 NC_001847.1 + 50923 0.67 0.825993
Target:  5'- gGCGGCCCCGGCcgucaGGGccugcagGUcgucgaggcugaaGUCCUCa -3'
miRNA:   3'- -CGUCGGGGCCGa----CCCaua----UA-------------UAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.