miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6678 3' -56 NC_001847.1 + 114811 0.68 0.818258
Target:  5'- gGguGCCCUGGC--GGUAcaugGUCCCUc -3'
miRNA:   3'- -CguCGGGGCCGacCCAUaua-UAGGGG- -5'
6678 3' -56 NC_001847.1 + 21666 0.68 0.818258
Target:  5'- gGCgAGCCCCccGGCgacGGGUAUGgcgagGagCCCg -3'
miRNA:   3'- -CG-UCGGGG--CCGa--CCCAUAUa----UagGGG- -5'
6678 3' -56 NC_001847.1 + 59125 0.68 0.818258
Target:  5'- cGCcGCUCCGGCcgcgcGGGUG---GUCCCa -3'
miRNA:   3'- -CGuCGGGGCCGa----CCCAUauaUAGGGg -5'
6678 3' -56 NC_001847.1 + 124479 0.68 0.818258
Target:  5'- gGCgAGCCCCccGGCgacGGGUAUGgcgagGagCCCg -3'
miRNA:   3'- -CG-UCGGGG--CCGa--CCCAUAUa----UagGGG- -5'
6678 3' -56 NC_001847.1 + 117081 0.68 0.818258
Target:  5'- gGUAGCCCCGG--GGGUu----UCCCg -3'
miRNA:   3'- -CGUCGGGGCCgaCCCAuauauAGGGg -5'
6678 3' -56 NC_001847.1 + 77933 0.68 0.809502
Target:  5'- -gAGCCCCGGCggccGGGgc---GUCCUg -3'
miRNA:   3'- cgUCGGGGCCGa---CCCauauaUAGGGg -5'
6678 3' -56 NC_001847.1 + 27402 0.68 0.809502
Target:  5'- uGCAGCaucccgCCGGCccaaGGGU-UGUAgCCCCg -3'
miRNA:   3'- -CGUCGg-----GGCCGa---CCCAuAUAUaGGGG- -5'
6678 3' -56 NC_001847.1 + 60014 0.68 0.809502
Target:  5'- cCGGCCCCGGC-GGGg------CCCg -3'
miRNA:   3'- cGUCGGGGCCGaCCCauauauaGGGg -5'
6678 3' -56 NC_001847.1 + 43957 0.68 0.809502
Target:  5'- uGCuGCCguaCCGGCUGGccuUGUGccgCCCCa -3'
miRNA:   3'- -CGuCGG---GGCCGACCcauAUAUa--GGGG- -5'
6678 3' -56 NC_001847.1 + 123480 0.68 0.800583
Target:  5'- cGCGGgCUCGGCUGGGg------CCgCCg -3'
miRNA:   3'- -CGUCgGGGCCGACCCauauauaGG-GG- -5'
6678 3' -56 NC_001847.1 + 24351 0.68 0.791509
Target:  5'- cGCGGCCUuuuCGGUaGGGUAc-UGUCCgCCu -3'
miRNA:   3'- -CGUCGGG---GCCGaCCCAUauAUAGG-GG- -5'
6678 3' -56 NC_001847.1 + 34098 0.68 0.790594
Target:  5'- cCGGCCUCGGC-GGGUGcgcaaauUGggaCCCCg -3'
miRNA:   3'- cGUCGGGGCCGaCCCAU-------AUauaGGGG- -5'
6678 3' -56 NC_001847.1 + 36085 0.68 0.782291
Target:  5'- gGCGGCCCCGGgcCUGGcGggcauuuuUAUCCgCg -3'
miRNA:   3'- -CGUCGGGGCC--GACC-Cauau----AUAGGgG- -5'
6678 3' -56 NC_001847.1 + 120059 0.68 0.773877
Target:  5'- cGCGGCCCC-GCUGccgcaggcgAUCCCCg -3'
miRNA:   3'- -CGUCGGGGcCGACccauaua--UAGGGG- -5'
6678 3' -56 NC_001847.1 + 12989 0.68 0.772936
Target:  5'- uGCAGUaCCGGCUGGGgGUGgggggCCUg -3'
miRNA:   3'- -CGUCGgGGCCGACCCaUAUaua--GGGg -5'
6678 3' -56 NC_001847.1 + 72044 0.69 0.763454
Target:  5'- gGCGGCCCCGG--GGcGUAcccgGUCCCg -3'
miRNA:   3'- -CGUCGGGGCCgaCC-CAUaua-UAGGGg -5'
6678 3' -56 NC_001847.1 + 72591 0.69 0.757707
Target:  5'- cGCGGCCgCGGCggcagaaGGGgcagccgcuUCCCCu -3'
miRNA:   3'- -CGUCGGgGCCGa------CCCauauau---AGGGG- -5'
6678 3' -56 NC_001847.1 + 106578 0.69 0.753854
Target:  5'- cCAGCCCCGGCgcc----GUGUCCUCg -3'
miRNA:   3'- cGUCGGGGCCGacccauaUAUAGGGG- -5'
6678 3' -56 NC_001847.1 + 82038 0.69 0.732365
Target:  5'- aGCAGCCgCUGGC-GGGccgccg-CCCCg -3'
miRNA:   3'- -CGUCGG-GGCCGaCCCauauauaGGGG- -5'
6678 3' -56 NC_001847.1 + 108170 0.69 0.72444
Target:  5'- cCGGCCgCGGCUGGaUGUcUGUCUCUc -3'
miRNA:   3'- cGUCGGgGCCGACCcAUAuAUAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.