miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6678 3' -56 NC_001847.1 + 134878 0.67 0.858545
Target:  5'- gGCGGCCCCcgGGCUcGGG-------CCCCu -3'
miRNA:   3'- -CGUCGGGG--CCGA-CCCauauauaGGGG- -5'
6678 3' -56 NC_001847.1 + 134263 0.7 0.673932
Target:  5'- gGCGGCCCCGGCgcgGGccgccgccgcgcGUGgagGUGcUCUCCu -3'
miRNA:   3'- -CGUCGGGGCCGa--CC------------CAUa--UAU-AGGGG- -5'
6678 3' -56 NC_001847.1 + 131120 0.66 0.871401
Target:  5'- aGCGGCCCCgcgagaggcgGGCgccGGGcccggcgCCCCg -3'
miRNA:   3'- -CGUCGGGG----------CCGa--CCCauauauaGGGG- -5'
6678 3' -56 NC_001847.1 + 125669 0.66 0.901708
Target:  5'- cGCGGUCCUGGguuucagcuCUGGGgg-GUcgCCgCCg -3'
miRNA:   3'- -CGUCGGGGCC---------GACCCauaUAuaGG-GG- -5'
6678 3' -56 NC_001847.1 + 124596 0.73 0.531116
Target:  5'- cCGGCgCCGGCcGGGcgcggGUCCCCg -3'
miRNA:   3'- cGUCGgGGCCGaCCCauauaUAGGGG- -5'
6678 3' -56 NC_001847.1 + 124479 0.68 0.818258
Target:  5'- gGCgAGCCCCccGGCgacGGGUAUGgcgagGagCCCg -3'
miRNA:   3'- -CG-UCGGGG--CCGa--CCCAUAUa----UagGGG- -5'
6678 3' -56 NC_001847.1 + 123881 0.67 0.83525
Target:  5'- -aGGCCCUggGGCgGGGcccgacUGUCCCCu -3'
miRNA:   3'- cgUCGGGG--CCGaCCCauau--AUAGGGG- -5'
6678 3' -56 NC_001847.1 + 123622 0.66 0.888479
Target:  5'- cGCAGCaCCCGGC-GGcUAcGUgccaGUUCCCg -3'
miRNA:   3'- -CGUCG-GGGCCGaCCcAUaUA----UAGGGG- -5'
6678 3' -56 NC_001847.1 + 123480 0.68 0.800583
Target:  5'- cGCGGgCUCGGCUGGGg------CCgCCg -3'
miRNA:   3'- -CGUCgGGGCCGACCCauauauaGG-GG- -5'
6678 3' -56 NC_001847.1 + 120059 0.68 0.773877
Target:  5'- cGCGGCCCC-GCUGccgcaggcgAUCCCCg -3'
miRNA:   3'- -CGUCGGGGcCGACccauaua--UAGGGG- -5'
6678 3' -56 NC_001847.1 + 118698 1.15 0.001055
Target:  5'- cGCAGCCCCGGCUGGGUAUAUAUCCCCg -3'
miRNA:   3'- -CGUCGGGGCCGACCCAUAUAUAGGGG- -5'
6678 3' -56 NC_001847.1 + 117081 0.68 0.818258
Target:  5'- gGUAGCCCCGG--GGGUu----UCCCg -3'
miRNA:   3'- -CGUCGGGGCCgaCCCAuauauAGGGg -5'
6678 3' -56 NC_001847.1 + 114811 0.68 0.818258
Target:  5'- gGguGCCCUGGC--GGUAcaugGUCCCUc -3'
miRNA:   3'- -CguCGGGGCCGacCCAUaua-UAGGGG- -5'
6678 3' -56 NC_001847.1 + 112762 0.66 0.866934
Target:  5'- cGCGaCCCCGGCccgcgGGGgccucGUCCCa -3'
miRNA:   3'- -CGUcGGGGCCGa----CCCauauaUAGGGg -5'
6678 3' -56 NC_001847.1 + 111550 0.66 0.877236
Target:  5'- cCAGCCCCGGCaaaggcaaGGUAagcgcauccgCCCCg -3'
miRNA:   3'- cGUCGGGGCCGac------CCAUauaua-----GGGG- -5'
6678 3' -56 NC_001847.1 + 111294 0.7 0.71045
Target:  5'- gGCGGCgCUCGGCcGGGggcggggCCCCu -3'
miRNA:   3'- -CGUCG-GGGCCGaCCCauauauaGGGG- -5'
6678 3' -56 NC_001847.1 + 109798 0.67 0.842655
Target:  5'- uCAGCUugCCGGCgUGGGUAguuUGUAUaugcacacccgcgCCCCu -3'
miRNA:   3'- cGUCGG--GGCCG-ACCCAU---AUAUA-------------GGGG- -5'
6678 3' -56 NC_001847.1 + 108170 0.69 0.72444
Target:  5'- cCGGCCgCGGCUGGaUGUcUGUCUCUc -3'
miRNA:   3'- cGUCGGgGCCGACCcAUAuAUAGGGG- -5'
6678 3' -56 NC_001847.1 + 106897 0.66 0.89521
Target:  5'- uCGGCCUCGGCcucagcgucGGcGUcgGUGcUCCCCu -3'
miRNA:   3'- cGUCGGGGCCGa--------CC-CAuaUAU-AGGGG- -5'
6678 3' -56 NC_001847.1 + 106578 0.69 0.753854
Target:  5'- cCAGCCCCGGCgcc----GUGUCCUCg -3'
miRNA:   3'- cGUCGGGGCCGacccauaUAUAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.