miRNA display CGI


Results 41 - 60 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6678 5' -57 NC_001847.1 + 53692 0.66 0.85315
Target:  5'- -aAGAuGUGCGCgcgcgagCGCgCCGCcgGCGGCu -3'
miRNA:   3'- gaUCUcUAUGUGa------GCGgGGCG--CGCCG- -5'
6678 5' -57 NC_001847.1 + 31711 0.66 0.85315
Target:  5'- -gGGGGAgGCGCggGCCgCGCGCcGCu -3'
miRNA:   3'- gaUCUCUaUGUGagCGGgGCGCGcCG- -5'
6678 5' -57 NC_001847.1 + 30123 0.66 0.85315
Target:  5'- gCUGGcGGccUACuGC-CGCCCCGagguCGCGGCg -3'
miRNA:   3'- -GAUCuCU--AUG-UGaGCGGGGC----GCGCCG- -5'
6678 5' -57 NC_001847.1 + 57058 0.66 0.85315
Target:  5'- --cGAGGcgGCuaaGCUCaaCCCCaGCGCGGCg -3'
miRNA:   3'- gauCUCUa-UG---UGAGc-GGGG-CGCGCCG- -5'
6678 5' -57 NC_001847.1 + 98112 0.66 0.85315
Target:  5'- gCUAGAGugcgagcccgGCGCccCGCUCCGCaCGGUg -3'
miRNA:   3'- -GAUCUCua--------UGUGa-GCGGGGCGcGCCG- -5'
6678 5' -57 NC_001847.1 + 17609 0.66 0.85315
Target:  5'- -aAGGGGUugcGCACggccucgucgUCGCCgCGCGUGGa -3'
miRNA:   3'- gaUCUCUA---UGUG----------AGCGGgGCGCGCCg -5'
6678 5' -57 NC_001847.1 + 47035 0.66 0.850798
Target:  5'- -cAGGcGAUACaACUCGCggugcgugucgcggCCgGCGCGGUc -3'
miRNA:   3'- gaUCU-CUAUG-UGAGCG--------------GGgCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 50830 0.66 0.84524
Target:  5'- -cGGGGggGCGCUgccCGCgCCGgGgGGCg -3'
miRNA:   3'- gaUCUCuaUGUGA---GCGgGGCgCgCCG- -5'
6678 5' -57 NC_001847.1 + 27502 0.66 0.84524
Target:  5'- -cAGAG--GC-CUCgGCCgCCGcCGCGGCg -3'
miRNA:   3'- gaUCUCuaUGuGAG-CGG-GGC-GCGCCG- -5'
6678 5' -57 NC_001847.1 + 32263 0.66 0.84524
Target:  5'- -cAGAcgcGUGCgugGCUCGCgccgUCCGCGUGGCg -3'
miRNA:   3'- gaUCUc--UAUG---UGAGCG----GGGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 93493 0.66 0.84524
Target:  5'- -cAGGGGUACuuCUCGCggcccCCCGgcgcgccgcuCGCGGCc -3'
miRNA:   3'- gaUCUCUAUGu-GAGCG-----GGGC----------GCGCCG- -5'
6678 5' -57 NC_001847.1 + 104756 0.66 0.84524
Target:  5'- aCUcGGGccgccgGCGCUCGUCCuCGCcggGCGGCc -3'
miRNA:   3'- -GAuCUCua----UGUGAGCGGG-GCG---CGCCG- -5'
6678 5' -57 NC_001847.1 + 85399 0.66 0.84524
Target:  5'- --cGGGGUacagcggcacgcGCAC-CGCCUCGC-CGGCg -3'
miRNA:   3'- gauCUCUA------------UGUGaGCGGGGCGcGCCG- -5'
6678 5' -57 NC_001847.1 + 129922 0.66 0.84524
Target:  5'- -------cGCGCgCGCCCCGCcggccgccGCGGCg -3'
miRNA:   3'- gaucucuaUGUGaGCGGGGCG--------CGCCG- -5'
6678 5' -57 NC_001847.1 + 80748 0.66 0.84524
Target:  5'- ---cGGcgGCGCcCGCCUCGCccGCGGCc -3'
miRNA:   3'- gaucUCuaUGUGaGCGGGGCG--CGCCG- -5'
6678 5' -57 NC_001847.1 + 79998 0.66 0.84524
Target:  5'- -cGGcGGUgACGCccCGCgCCCGCGCGGa -3'
miRNA:   3'- gaUCuCUA-UGUGa-GCG-GGGCGCGCCg -5'
6678 5' -57 NC_001847.1 + 27109 0.66 0.84524
Target:  5'- -------cGCGCgCGCCCCGCcggccgccGCGGCg -3'
miRNA:   3'- gaucucuaUGUGaGCGGGGCG--------CGCCG- -5'
6678 5' -57 NC_001847.1 + 71008 0.66 0.84524
Target:  5'- -cGGAGGU---UUCGUUCgGCGCGGCc -3'
miRNA:   3'- gaUCUCUAuguGAGCGGGgCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 65798 0.66 0.84524
Target:  5'- --cGGGuccggACGCUcCGCUagCUGCGCGGCu -3'
miRNA:   3'- gauCUCua---UGUGA-GCGG--GGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 43415 0.66 0.844439
Target:  5'- -cAGGGcgcUGCAgcugggcCUCGCgUCGCGCGGUg -3'
miRNA:   3'- gaUCUCu--AUGU-------GAGCGgGGCGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.