miRNA display CGI


Results 21 - 40 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6678 5' -57 NC_001847.1 + 36405 0.66 0.867626
Target:  5'- --cGAcGGUGCACUCGCgcgcagacCCUGCgacgcgcgccguaGCGGCg -3'
miRNA:   3'- gauCU-CUAUGUGAGCG--------GGGCG-------------CGCCG- -5'
6678 5' -57 NC_001847.1 + 73873 0.66 0.863888
Target:  5'- --cGGG--GCGCgucaguuccgccggCGCCCCGCGCaGCg -3'
miRNA:   3'- gauCUCuaUGUGa-------------GCGGGGCGCGcCG- -5'
6678 5' -57 NC_001847.1 + 2972 0.66 0.860861
Target:  5'- --uGAGAccgGCAUUUuauguucgcgGCCCCacccuGCGCGGCa -3'
miRNA:   3'- gauCUCUa--UGUGAG----------CGGGG-----CGCGCCG- -5'
6678 5' -57 NC_001847.1 + 59939 0.66 0.860861
Target:  5'- -aAGGGcgccACGCaagCGUCCgGCGUGGCg -3'
miRNA:   3'- gaUCUCua--UGUGa--GCGGGgCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 129682 0.66 0.860861
Target:  5'- -aGGAGAgagACGCggcCGCCaCCGcCGUcgGGCa -3'
miRNA:   3'- gaUCUCUa--UGUGa--GCGG-GGC-GCG--CCG- -5'
6678 5' -57 NC_001847.1 + 98750 0.66 0.860861
Target:  5'- --cGAG-UGCACcgUCGCCgCgGCGCGcGCu -3'
miRNA:   3'- gauCUCuAUGUG--AGCGG-GgCGCGC-CG- -5'
6678 5' -57 NC_001847.1 + 26869 0.66 0.860861
Target:  5'- -aGGAGAgagACGCggcCGCCaCCGcCGUcgGGCa -3'
miRNA:   3'- gaUCUCUa--UGUGa--GCGG-GGC-GCG--CCG- -5'
6678 5' -57 NC_001847.1 + 72702 0.66 0.860861
Target:  5'- -gGGAGAgcgGC-CGCCCgGUggGCGGCa -3'
miRNA:   3'- gaUCUCUaugUGaGCGGGgCG--CGCCG- -5'
6678 5' -57 NC_001847.1 + 55154 0.66 0.860861
Target:  5'- -cGGGGcguCAC-CGCCgCGCaGCGGCu -3'
miRNA:   3'- gaUCUCuauGUGaGCGGgGCG-CGCCG- -5'
6678 5' -57 NC_001847.1 + 100808 0.66 0.858569
Target:  5'- --cGGGGUugccauugcggccgAC-CUCGgCCCGgGCGGCu -3'
miRNA:   3'- gauCUCUA--------------UGuGAGCgGGGCgCGCCG- -5'
6678 5' -57 NC_001847.1 + 17609 0.66 0.85315
Target:  5'- -aAGGGGUugcGCACggccucgucgUCGCCgCGCGUGGa -3'
miRNA:   3'- gaUCUCUA---UGUG----------AGCGGgGCGCGCCg -5'
6678 5' -57 NC_001847.1 + 59261 0.66 0.85315
Target:  5'- -cAGGGccaugauUugGCUCucgaGCCCCG-GCGGCg -3'
miRNA:   3'- gaUCUCu------AugUGAG----CGGGGCgCGCCG- -5'
6678 5' -57 NC_001847.1 + 98112 0.66 0.85315
Target:  5'- gCUAGAGugcgagcccgGCGCccCGCUCCGCaCGGUg -3'
miRNA:   3'- -GAUCUCua--------UGUGa-GCGGGGCGcGCCG- -5'
6678 5' -57 NC_001847.1 + 132936 0.66 0.85315
Target:  5'- gCUGGcGGccUACuGC-CGCCCCGagguCGCGGCg -3'
miRNA:   3'- -GAUCuCU--AUG-UGaGCGGGGC----GCGCCG- -5'
6678 5' -57 NC_001847.1 + 11837 0.66 0.85315
Target:  5'- uCUGGcguaAGGccucugGCGC-CGCCCUGCggGCGGCg -3'
miRNA:   3'- -GAUC----UCUa-----UGUGaGCGGGGCG--CGCCG- -5'
6678 5' -57 NC_001847.1 + 57058 0.66 0.85315
Target:  5'- --cGAGGcgGCuaaGCUCaaCCCCaGCGCGGCg -3'
miRNA:   3'- gauCUCUa-UG---UGAGc-GGGG-CGCGCCG- -5'
6678 5' -57 NC_001847.1 + 20058 0.66 0.85315
Target:  5'- --cGGGcaaaaAUGCGCUCGCugCCUGCGCucggGGCg -3'
miRNA:   3'- gauCUC-----UAUGUGAGCG--GGGCGCG----CCG- -5'
6678 5' -57 NC_001847.1 + 134524 0.66 0.85315
Target:  5'- -gGGGGAgGCGCggGCCgCGCGCcGCu -3'
miRNA:   3'- gaUCUCUaUGUGagCGGgGCGCGcCG- -5'
6678 5' -57 NC_001847.1 + 71194 0.66 0.85315
Target:  5'- cCUGGcac-GCGCUgcUGCCCC-CGCGGCc -3'
miRNA:   3'- -GAUCucuaUGUGA--GCGGGGcGCGCCG- -5'
6678 5' -57 NC_001847.1 + 72018 0.66 0.85315
Target:  5'- ----uGGUGCACaacCGaCCCgUGCGCGGCg -3'
miRNA:   3'- gaucuCUAUGUGa--GC-GGG-GCGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.