miRNA display CGI


Results 21 - 40 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6678 5' -57 NC_001847.1 + 72973 0.75 0.356766
Target:  5'- uUGGGGAcGCGgaCGCgCCCGCGCGGg -3'
miRNA:   3'- gAUCUCUaUGUgaGCG-GGGCGCGCCg -5'
6678 5' -57 NC_001847.1 + 57558 0.75 0.356766
Target:  5'- ---cGGGUGCcgccgugcgaGCUCGgCCCGCGCGGCc -3'
miRNA:   3'- gaucUCUAUG----------UGAGCgGGGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 1334 0.75 0.372749
Target:  5'- --cGAGccccaGCGCcgCGCCCUGCGCGGCc -3'
miRNA:   3'- gauCUCua---UGUGa-GCGGGGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 104147 0.75 0.372749
Target:  5'- --cGAGccccaGCGCcgCGCCCUGCGCGGCc -3'
miRNA:   3'- gauCUCua---UGUGa-GCGGGGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 133041 0.75 0.386712
Target:  5'- --cGAGAUcgcggcccgccgccGCGCggGCCCCGCGgGGCg -3'
miRNA:   3'- gauCUCUA--------------UGUGagCGGGGCGCgCCG- -5'
6678 5' -57 NC_001847.1 + 30228 0.75 0.386712
Target:  5'- --cGAGAUcgcggcccgccgccGCGCggGCCCCGCGgGGCg -3'
miRNA:   3'- gauCUCUA--------------UGUGagCGGGGCGCgCCG- -5'
6678 5' -57 NC_001847.1 + 29047 0.75 0.388377
Target:  5'- --cGAGcUGCgcgccguGCUCGCCggCCGCGCGGCg -3'
miRNA:   3'- gauCUCuAUG-------UGAGCGG--GGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 131860 0.75 0.388377
Target:  5'- --cGAGcUGCgcgccguGCUCGCCggCCGCGCGGCg -3'
miRNA:   3'- gauCUCuAUG-------UGAGCGG--GGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 28318 0.74 0.397619
Target:  5'- -gAGAGGcggGCGCcgggcccggCGCCCCGCGgGGCc -3'
miRNA:   3'- gaUCUCUa--UGUGa--------GCGGGGCGCgCCG- -5'
6678 5' -57 NC_001847.1 + 101445 0.74 0.397619
Target:  5'- gCUGGGGG-GCGCggaaacUGCCgCCGCGCGGCc -3'
miRNA:   3'- -GAUCUCUaUGUGa-----GCGG-GGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 131131 0.74 0.397619
Target:  5'- -gAGAGGcggGCGCcgggcccggCGCCCCGCGgGGCc -3'
miRNA:   3'- gaUCUCUa--UGUGa--------GCGGGGCGCgCCG- -5'
6678 5' -57 NC_001847.1 + 33685 0.74 0.397619
Target:  5'- gCUAGAGGcgcagGCGCUCGCggCGCGgCGGCg -3'
miRNA:   3'- -GAUCUCUa----UGUGAGCGggGCGC-GCCG- -5'
6678 5' -57 NC_001847.1 + 125457 0.74 0.406143
Target:  5'- -cGGGGAggGCggGCUUGCCCCGgGCGGg -3'
miRNA:   3'- gaUCUCUa-UG--UGAGCGGGGCgCGCCg -5'
6678 5' -57 NC_001847.1 + 22644 0.74 0.406143
Target:  5'- -cGGGGAggGCggGCUUGCCCCGgGCGGg -3'
miRNA:   3'- gaUCUCUa-UG--UGAGCGGGGCgCGCCg -5'
6678 5' -57 NC_001847.1 + 3985 0.74 0.406143
Target:  5'- -cGGGGGccggGCGCgcgGCCCCGCGgGGCg -3'
miRNA:   3'- gaUCUCUa---UGUGag-CGGGGCGCgCCG- -5'
6678 5' -57 NC_001847.1 + 12983 0.74 0.413044
Target:  5'- gCUGGuucccucuC-CUCGUCCCGCGCGGCg -3'
miRNA:   3'- -GAUCucuau---GuGAGCGGGGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 32885 0.74 0.414781
Target:  5'- gCUGGAGG-GCACggugcgCGCCgCGCGCGaGCg -3'
miRNA:   3'- -GAUCUCUaUGUGa-----GCGGgGCGCGC-CG- -5'
6678 5' -57 NC_001847.1 + 15055 0.74 0.414781
Target:  5'- -------gGCGCUuuaucuccCGCCCCGCGCGGCu -3'
miRNA:   3'- gaucucuaUGUGA--------GCGGGGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 125076 0.74 0.414781
Target:  5'- -cGGcGggGCGCUgGgCCCGCGCGGCc -3'
miRNA:   3'- gaUCuCuaUGUGAgCgGGGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 5661 0.74 0.423531
Target:  5'- -cAGcGGAUGCGCgcCGUCgCGCGCGGCg -3'
miRNA:   3'- gaUC-UCUAUGUGa-GCGGgGCGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.