miRNA display CGI


Results 21 - 40 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6678 5' -57 NC_001847.1 + 120488 0.66 0.837139
Target:  5'- -------gACACgCGCCCCGCucgcagcgaGCGGCg -3'
miRNA:   3'- gaucucuaUGUGaGCGGGGCG---------CGCCG- -5'
6678 5' -57 NC_001847.1 + 71008 0.66 0.84524
Target:  5'- -cGGAGGU---UUCGUUCgGCGCGGCc -3'
miRNA:   3'- gaUCUCUAuguGAGCGGGgCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 73873 0.66 0.863888
Target:  5'- --cGGG--GCGCgucaguuccgccggCGCCCCGCGCaGCg -3'
miRNA:   3'- gauCUCuaUGUGa-------------GCGGGGCGCGcCG- -5'
6678 5' -57 NC_001847.1 + 101413 0.66 0.868367
Target:  5'- -cGGGGGU---CUCGUcuCCCGCcGCGGCu -3'
miRNA:   3'- gaUCUCUAuguGAGCG--GGGCG-CGCCG- -5'
6678 5' -57 NC_001847.1 + 59708 0.66 0.836318
Target:  5'- --cGGGAacaccGCGCUCGCCUgcagguaCGUGUGGCc -3'
miRNA:   3'- gauCUCUa----UGUGAGCGGG-------GCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 111389 0.66 0.868367
Target:  5'- -gGGAGGgcacagGCAaauCagGCCCCGCcagggGCGGCg -3'
miRNA:   3'- gaUCUCUa-----UGU---GagCGGGGCG-----CGCCG- -5'
6678 5' -57 NC_001847.1 + 27502 0.66 0.84524
Target:  5'- -cAGAG--GC-CUCgGCCgCCGcCGCGGCg -3'
miRNA:   3'- gaUCUCuaUGuGAG-CGG-GGC-GCGCCG- -5'
6678 5' -57 NC_001847.1 + 98112 0.66 0.85315
Target:  5'- gCUAGAGugcgagcccgGCGCccCGCUCCGCaCGGUg -3'
miRNA:   3'- -GAUCUCua--------UGUGa-GCGGGGCGcGCCG- -5'
6678 5' -57 NC_001847.1 + 132382 0.66 0.837139
Target:  5'- -cGGGGGcgccgGCGCcggCGCCgCCGCGCcgGGCc -3'
miRNA:   3'- gaUCUCUa----UGUGa--GCGG-GGCGCG--CCG- -5'
6678 5' -57 NC_001847.1 + 72018 0.66 0.85315
Target:  5'- ----uGGUGCACaacCGaCCCgUGCGCGGCg -3'
miRNA:   3'- gaucuCUAUGUGa--GC-GGG-GCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 100808 0.66 0.858569
Target:  5'- --cGGGGUugccauugcggccgAC-CUCGgCCCGgGCGGCu -3'
miRNA:   3'- gauCUCUA--------------UGuGAGCgGGGCgCGCCG- -5'
6678 5' -57 NC_001847.1 + 65798 0.66 0.84524
Target:  5'- --cGGGuccggACGCUcCGCUagCUGCGCGGCu -3'
miRNA:   3'- gauCUCua---UGUGA-GCGG--GGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 53246 0.66 0.868367
Target:  5'- gCUGGcuGcgGCGC-CGCCUCGgCGgGGCg -3'
miRNA:   3'- -GAUCu-CuaUGUGaGCGGGGC-GCgCCG- -5'
6678 5' -57 NC_001847.1 + 15099 0.66 0.868367
Target:  5'- -cGGGGccGCGCUCaugcugacgGCCCUGacgGCGGCg -3'
miRNA:   3'- gaUCUCuaUGUGAG---------CGGGGCg--CGCCG- -5'
6678 5' -57 NC_001847.1 + 17609 0.66 0.85315
Target:  5'- -aAGGGGUugcGCACggccucgucgUCGCCgCGCGUGGa -3'
miRNA:   3'- gaUCUCUA---UGUG----------AGCGGgGCGCGCCg -5'
6678 5' -57 NC_001847.1 + 71194 0.66 0.85315
Target:  5'- cCUGGcac-GCGCUgcUGCCCC-CGCGGCc -3'
miRNA:   3'- -GAUCucuaUGUGA--GCGGGGcGCGCCG- -5'
6678 5' -57 NC_001847.1 + 134524 0.66 0.85315
Target:  5'- -gGGGGAgGCGCggGCCgCGCGCcGCu -3'
miRNA:   3'- gaUCUCUaUGUGagCGGgGCGCGcCG- -5'
6678 5' -57 NC_001847.1 + 15987 0.66 0.868367
Target:  5'- --------cCGC-CGCCCCGCgGCGGCc -3'
miRNA:   3'- gaucucuauGUGaGCGGGGCG-CGCCG- -5'
6678 5' -57 NC_001847.1 + 129682 0.66 0.860861
Target:  5'- -aGGAGAgagACGCggcCGCCaCCGcCGUcgGGCa -3'
miRNA:   3'- gaUCUCUa--UGUGa--GCGG-GGC-GCG--CCG- -5'
6678 5' -57 NC_001847.1 + 129922 0.66 0.84524
Target:  5'- -------cGCGCgCGCCCCGCcggccgccGCGGCg -3'
miRNA:   3'- gaucucuaUGUGaGCGGGGCG--------CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.