miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6678 5' -57 NC_001847.1 + 66040 0.66 0.837139
Target:  5'- -aGGAGGUAUACgCGCacguCgGCGgCGGCg -3'
miRNA:   3'- gaUCUCUAUGUGaGCGg---GgCGC-GCCG- -5'
6678 5' -57 NC_001847.1 + 17609 0.66 0.85315
Target:  5'- -aAGGGGUugcGCACggccucgucgUCGCCgCGCGUGGa -3'
miRNA:   3'- gaUCUCUA---UGUG----------AGCGGgGCGCGCCg -5'
6678 5' -57 NC_001847.1 + 57058 0.66 0.85315
Target:  5'- --cGAGGcgGCuaaGCUCaaCCCCaGCGCGGCg -3'
miRNA:   3'- gauCUCUa-UG---UGAGc-GGGG-CGCGCCG- -5'
6678 5' -57 NC_001847.1 + 27502 0.66 0.84524
Target:  5'- -cAGAG--GC-CUCgGCCgCCGcCGCGGCg -3'
miRNA:   3'- gaUCUCuaUGuGAG-CGG-GGC-GCGCCG- -5'
6678 5' -57 NC_001847.1 + 11837 0.66 0.85315
Target:  5'- uCUGGcguaAGGccucugGCGC-CGCCCUGCggGCGGCg -3'
miRNA:   3'- -GAUC----UCUa-----UGUGaGCGGGGCG--CGCCG- -5'
6678 5' -57 NC_001847.1 + 59261 0.66 0.85315
Target:  5'- -cAGGGccaugauUugGCUCucgaGCCCCG-GCGGCg -3'
miRNA:   3'- gaUCUCu------AugUGAG----CGGGGCgCGCCG- -5'
6678 5' -57 NC_001847.1 + 120488 0.66 0.837139
Target:  5'- -------gACACgCGCCCCGCucgcagcgaGCGGCg -3'
miRNA:   3'- gaucucuaUGUGaGCGGGGCG---------CGCCG- -5'
6678 5' -57 NC_001847.1 + 129922 0.66 0.84524
Target:  5'- -------cGCGCgCGCCCCGCcggccgccGCGGCg -3'
miRNA:   3'- gaucucuaUGUGaGCGGGGCG--------CGCCG- -5'
6678 5' -57 NC_001847.1 + 59708 0.66 0.836318
Target:  5'- --cGGGAacaccGCGCUCGCCUgcagguaCGUGUGGCc -3'
miRNA:   3'- gauCUCUa----UGUGAGCGGG-------GCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 35648 0.66 0.837139
Target:  5'- gCUGGAcc-GCGC-CGCCUCG-GCGGCc -3'
miRNA:   3'- -GAUCUcuaUGUGaGCGGGGCgCGCCG- -5'
6678 5' -57 NC_001847.1 + 104756 0.66 0.84524
Target:  5'- aCUcGGGccgccgGCGCUCGUCCuCGCcggGCGGCc -3'
miRNA:   3'- -GAuCUCua----UGUGAGCGGG-GCG---CGCCG- -5'
6678 5' -57 NC_001847.1 + 93789 0.66 0.837139
Target:  5'- ------cUugGCUgGUUCCGCGCGGCc -3'
miRNA:   3'- gaucucuAugUGAgCGGGGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 71008 0.66 0.84524
Target:  5'- -cGGAGGU---UUCGUUCgGCGCGGCc -3'
miRNA:   3'- gaUCUCUAuguGAGCGGGgCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 132382 0.66 0.837139
Target:  5'- -cGGGGGcgccgGCGCcggCGCCgCCGCGCcgGGCc -3'
miRNA:   3'- gaUCUCUa----UGUGa--GCGG-GGCGCG--CCG- -5'
6678 5' -57 NC_001847.1 + 32263 0.66 0.84524
Target:  5'- -cAGAcgcGUGCgugGCUCGCgccgUCCGCGUGGCg -3'
miRNA:   3'- gaUCUc--UAUG---UGAGCG----GGGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 98112 0.66 0.85315
Target:  5'- gCUAGAGugcgagcccgGCGCccCGCUCCGCaCGGUg -3'
miRNA:   3'- -GAUCUCua--------UGUGa-GCGGGGCGcGCCG- -5'
6678 5' -57 NC_001847.1 + 103674 0.66 0.837139
Target:  5'- -aGGAGA-GCAC-C-UCCaCGCGCGGCg -3'
miRNA:   3'- gaUCUCUaUGUGaGcGGG-GCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 65798 0.66 0.84524
Target:  5'- --cGGGuccggACGCUcCGCUagCUGCGCGGCu -3'
miRNA:   3'- gauCUCua---UGUGA-GCGG--GGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 36025 0.66 0.837139
Target:  5'- gCUGGGGcUGCGCgcggacgaGCacuaCGCGCGGCu -3'
miRNA:   3'- -GAUCUCuAUGUGag------CGgg--GCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 20058 0.66 0.85315
Target:  5'- --cGGGcaaaaAUGCGCUCGCugCCUGCGCucggGGCg -3'
miRNA:   3'- gauCUC-----UAUGUGAGCG--GGGCGCG----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.