Results 1 - 20 of 358 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6678 | 5' | -57 | NC_001847.1 | + | 17609 | 0.66 | 0.85315 |
Target: 5'- -aAGGGGUugcGCACggccucgucgUCGCCgCGCGUGGa -3' miRNA: 3'- gaUCUCUA---UGUG----------AGCGGgGCGCGCCg -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 11837 | 0.66 | 0.85315 |
Target: 5'- uCUGGcguaAGGccucugGCGC-CGCCCUGCggGCGGCg -3' miRNA: 3'- -GAUC----UCUa-----UGUGaGCGGGGCG--CGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 27502 | 0.66 | 0.84524 |
Target: 5'- -cAGAG--GC-CUCgGCCgCCGcCGCGGCg -3' miRNA: 3'- gaUCUCuaUGuGAG-CGG-GGC-GCGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 71008 | 0.66 | 0.84524 |
Target: 5'- -cGGAGGU---UUCGUUCgGCGCGGCc -3' miRNA: 3'- gaUCUCUAuguGAGCGGGgCGCGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 93789 | 0.66 | 0.837139 |
Target: 5'- ------cUugGCUgGUUCCGCGCGGCc -3' miRNA: 3'- gaucucuAugUGAgCGGGGCGCGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 59261 | 0.66 | 0.85315 |
Target: 5'- -cAGGGccaugauUugGCUCucgaGCCCCG-GCGGCg -3' miRNA: 3'- gaUCUCu------AugUGAG----CGGGGCgCGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 103674 | 0.66 | 0.837139 |
Target: 5'- -aGGAGA-GCAC-C-UCCaCGCGCGGCg -3' miRNA: 3'- gaUCUCUaUGUGaGcGGG-GCGCGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 35648 | 0.66 | 0.837139 |
Target: 5'- gCUGGAcc-GCGC-CGCCUCG-GCGGCc -3' miRNA: 3'- -GAUCUcuaUGUGaGCGGGGCgCGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 20058 | 0.66 | 0.85315 |
Target: 5'- --cGGGcaaaaAUGCGCUCGCugCCUGCGCucggGGCg -3' miRNA: 3'- gauCUC-----UAUGUGAGCG--GGGCGCG----CCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 57058 | 0.66 | 0.85315 |
Target: 5'- --cGAGGcgGCuaaGCUCaaCCCCaGCGCGGCg -3' miRNA: 3'- gauCUCUa-UG---UGAGc-GGGG-CGCGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 32263 | 0.66 | 0.84524 |
Target: 5'- -cAGAcgcGUGCgugGCUCGCgccgUCCGCGUGGCg -3' miRNA: 3'- gaUCUc--UAUG---UGAGCG----GGGCGCGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 129922 | 0.66 | 0.84524 |
Target: 5'- -------cGCGCgCGCCCCGCcggccgccGCGGCg -3' miRNA: 3'- gaucucuaUGUGaGCGGGGCG--------CGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 36025 | 0.66 | 0.837139 |
Target: 5'- gCUGGGGcUGCGCgcggacgaGCacuaCGCGCGGCu -3' miRNA: 3'- -GAUCUCuAUGUGag------CGgg--GCGCGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 120488 | 0.66 | 0.837139 |
Target: 5'- -------gACACgCGCCCCGCucgcagcgaGCGGCg -3' miRNA: 3'- gaucucuaUGUGaGCGGGGCG---------CGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 132382 | 0.66 | 0.837139 |
Target: 5'- -cGGGGGcgccgGCGCcggCGCCgCCGCGCcgGGCc -3' miRNA: 3'- gaUCUCUa----UGUGa--GCGG-GGCGCG--CCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 66040 | 0.66 | 0.837139 |
Target: 5'- -aGGAGGUAUACgCGCacguCgGCGgCGGCg -3' miRNA: 3'- gaUCUCUAUGUGaGCGg---GgCGC-GCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 98112 | 0.66 | 0.85315 |
Target: 5'- gCUAGAGugcgagcccgGCGCccCGCUCCGCaCGGUg -3' miRNA: 3'- -GAUCUCua--------UGUGa-GCGGGGCGcGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 104756 | 0.66 | 0.84524 |
Target: 5'- aCUcGGGccgccgGCGCUCGUCCuCGCcggGCGGCc -3' miRNA: 3'- -GAuCUCua----UGUGAGCGGG-GCG---CGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 65798 | 0.66 | 0.84524 |
Target: 5'- --cGGGuccggACGCUcCGCUagCUGCGCGGCu -3' miRNA: 3'- gauCUCua---UGUGA-GCGG--GGCGCGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 59708 | 0.66 | 0.836318 |
Target: 5'- --cGGGAacaccGCGCUCGCCUgcagguaCGUGUGGCc -3' miRNA: 3'- gauCUCUa----UGUGAGCGGG-------GCGCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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