miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6678 5' -57 NC_001847.1 + 118733 1.12 0.001418
Target:  5'- aCUAGAGAUACACUCGCCCCGCGCGGCu -3'
miRNA:   3'- -GAUCUCUAUGUGAGCGGGGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 78034 0.83 0.128631
Target:  5'- -gGGAGGUcauaaaggucucGCGCUCGCCCCuCGCGGCc -3'
miRNA:   3'- gaUCUCUA------------UGUGAGCGGGGcGCGCCG- -5'
6678 5' -57 NC_001847.1 + 110889 0.8 0.202929
Target:  5'- aUGGAcAUGCuCUCGCCcgCCGCGCGGCg -3'
miRNA:   3'- gAUCUcUAUGuGAGCGG--GGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 66663 0.79 0.223855
Target:  5'- cCUGGc---GCGCUUGCgCCCGCGCGGCg -3'
miRNA:   3'- -GAUCucuaUGUGAGCG-GGGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 117337 0.78 0.246587
Target:  5'- -gGGGGcgGC-CUCGCCCCcCGCGGCc -3'
miRNA:   3'- gaUCUCuaUGuGAGCGGGGcGCGCCG- -5'
6678 5' -57 NC_001847.1 + 51773 0.78 0.245996
Target:  5'- --uGGGAUGCggcgccaGCUCGCCCCGCGCGu- -3'
miRNA:   3'- gauCUCUAUG-------UGAGCGGGGCGCGCcg -5'
6678 5' -57 NC_001847.1 + 54101 0.77 0.277652
Target:  5'- cCUAGAG--GCGCUCGCCgCGCGggaGGCg -3'
miRNA:   3'- -GAUCUCuaUGUGAGCGGgGCGCg--CCG- -5'
6678 5' -57 NC_001847.1 + 124325 0.77 0.297747
Target:  5'- aUAGAGAgGCAaggcgCGCCUgCGCGCGGCg -3'
miRNA:   3'- gAUCUCUaUGUga---GCGGG-GCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 99511 0.77 0.304692
Target:  5'- cCUGGAGuuUGCGCcgaGCCCCGCGCcGCg -3'
miRNA:   3'- -GAUCUCu-AUGUGag-CGGGGCGCGcCG- -5'
6678 5' -57 NC_001847.1 + 101908 0.77 0.304692
Target:  5'- -cGGAGGcgcCGCggCGCCCgGCGCGGCg -3'
miRNA:   3'- gaUCUCUau-GUGa-GCGGGgCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 21512 0.77 0.297747
Target:  5'- aUAGAGAgGCAaggcgCGCCUgCGCGCGGCg -3'
miRNA:   3'- gAUCUCUaUGUga---GCGGG-GCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 88363 0.76 0.316781
Target:  5'- -gAGGGGcGCGCgggcgcggcggaccgGCCCCGCGCGGCg -3'
miRNA:   3'- gaUCUCUaUGUGag-------------CGGGGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 128429 0.76 0.333707
Target:  5'- -gAGGGccagacuacaGUGCGCUCgGCCCUGCGCGcGCg -3'
miRNA:   3'- gaUCUC----------UAUGUGAG-CGGGGCGCGC-CG- -5'
6678 5' -57 NC_001847.1 + 127232 0.76 0.331462
Target:  5'- -gGGGGAagaagcggcggccgcCGCgCGCCCCGCGCGGCu -3'
miRNA:   3'- gaUCUCUau-------------GUGaGCGGGGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 79684 0.76 0.326268
Target:  5'- gCUAGcGcgGCGCgCGCCCCGC-CGGCg -3'
miRNA:   3'- -GAUCuCuaUGUGaGCGGGGCGcGCCG- -5'
6678 5' -57 NC_001847.1 + 55742 0.76 0.326268
Target:  5'- -cGGuGGUccgGCUCGCgCCCGCGCGGCc -3'
miRNA:   3'- gaUCuCUAug-UGAGCG-GGGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 14814 0.76 0.326268
Target:  5'- -cGGAGcUGCGCggCGCCCugCGCGCGGUg -3'
miRNA:   3'- gaUCUCuAUGUGa-GCGGG--GCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 43580 0.76 0.318952
Target:  5'- --cGGGcgACGCgCGCCCCaGCGUGGCg -3'
miRNA:   3'- gauCUCuaUGUGaGCGGGG-CGCGCCG- -5'
6678 5' -57 NC_001847.1 + 131860 0.75 0.388377
Target:  5'- --cGAGcUGCgcgccguGCUCGCCggCCGCGCGGCg -3'
miRNA:   3'- gauCUCuAUG-------UGAGCGG--GGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 104147 0.75 0.372749
Target:  5'- --cGAGccccaGCGCcgCGCCCUGCGCGGCc -3'
miRNA:   3'- gauCUCua---UGUGa-GCGGGGCGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.