miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6678 5' -57 NC_001847.1 + 756 0.68 0.75684
Target:  5'- cCUAGGGcgAgGC-CGgCCCGCcgccgGCGGCg -3'
miRNA:   3'- -GAUCUCuaUgUGaGCgGGGCG-----CGCCG- -5'
6678 5' -57 NC_001847.1 + 861 0.66 0.837139
Target:  5'- -aGGAGA-GCAC-C-UCCaCGCGCGGCg -3'
miRNA:   3'- gaUCUCUaUGUGaGcGGG-GCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 1334 0.75 0.372749
Target:  5'- --cGAGccccaGCGCcgCGCCCUGCGCGGCc -3'
miRNA:   3'- gauCUCua---UGUGa-GCGGGGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 1430 0.67 0.811752
Target:  5'- ----cGGUGCGCggGCCCaggCGCGUGGCc -3'
miRNA:   3'- gaucuCUAUGUGagCGGG---GCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 1943 0.68 0.766318
Target:  5'- aCUcGGGccgccgGCGCUCGUCCuCGCcggGCGGCg -3'
miRNA:   3'- -GAuCUCua----UGUGAGCGGG-GCG---CGCCG- -5'
6678 5' -57 NC_001847.1 + 2075 0.68 0.75684
Target:  5'- -cGGuGGcgGCGagCGCCCCGCGgGGCc -3'
miRNA:   3'- gaUC-UCuaUGUgaGCGGGGCGCgCCG- -5'
6678 5' -57 NC_001847.1 + 2972 0.66 0.860861
Target:  5'- --uGAGAccgGCAUUUuauguucgcgGCCCCacccuGCGCGGCa -3'
miRNA:   3'- gauCUCUa--UGUGAG----------CGGGG-----CGCGCCG- -5'
6678 5' -57 NC_001847.1 + 3259 0.67 0.794005
Target:  5'- -cGGcAGggGCGC-CGgCgCCGCGCGGCc -3'
miRNA:   3'- gaUC-UCuaUGUGaGCgG-GGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 3953 0.67 0.802955
Target:  5'- -gGGGGggGCGC-CGUCuCCG-GCGGCg -3'
miRNA:   3'- gaUCUCuaUGUGaGCGG-GGCgCGCCG- -5'
6678 5' -57 NC_001847.1 + 3985 0.74 0.406143
Target:  5'- -cGGGGGccggGCGCgcgGCCCCGCGgGGCg -3'
miRNA:   3'- gaUCUCUa---UGUGag-CGGGGCGCgCCG- -5'
6678 5' -57 NC_001847.1 + 4280 0.68 0.765375
Target:  5'- cCUuGAGggGCGC-CGcCCCCGCcucggcuucgaugGCGGCg -3'
miRNA:   3'- -GAuCUCuaUGUGaGC-GGGGCG-------------CGCCG- -5'
6678 5' -57 NC_001847.1 + 4441 0.7 0.667708
Target:  5'- -cAGGGAaACGCgcaCGCCgugaaaggCCGCGCGGUu -3'
miRNA:   3'- gaUCUCUaUGUGa--GCGG--------GGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 5194 0.7 0.637163
Target:  5'- -gGGAGAaGCcCUCGCCggcucucucgCCGCgGCGGCc -3'
miRNA:   3'- gaUCUCUaUGuGAGCGG----------GGCG-CGCCG- -5'
6678 5' -57 NC_001847.1 + 5661 0.74 0.423531
Target:  5'- -cAGcGGAUGCGCgcCGUCgCGCGCGGCg -3'
miRNA:   3'- gaUC-UCUAUGUGa-GCGGgGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 6096 0.68 0.775678
Target:  5'- -cGGAGGcGCGagaCGCCCgcgagGCGCGGCg -3'
miRNA:   3'- gaUCUCUaUGUga-GCGGGg----CGCGCCG- -5'
6678 5' -57 NC_001847.1 + 6334 0.68 0.737566
Target:  5'- -----cGUACGCgggUGCCCCG-GCGGCa -3'
miRNA:   3'- gaucucUAUGUGa--GCGGGGCgCGCCG- -5'
6678 5' -57 NC_001847.1 + 8075 0.67 0.828013
Target:  5'- -cAGAGGgggGCAC-CGCCgCGgcgagaucggcgaCGCGGCg -3'
miRNA:   3'- gaUCUCUa--UGUGaGCGGgGC-------------GCGCCG- -5'
6678 5' -57 NC_001847.1 + 8478 0.67 0.820387
Target:  5'- -gGGGGcgGCGCUCGgCCggggGCGgGGCc -3'
miRNA:   3'- gaUCUCuaUGUGAGCgGGg---CGCgCCG- -5'
6678 5' -57 NC_001847.1 + 8576 0.66 0.868367
Target:  5'- -gGGAGGgcacagGCAaauCagGCCCCGCcagggGCGGCg -3'
miRNA:   3'- gaUCUCUa-----UGU---GagCGGGGCG-----CGCCG- -5'
6678 5' -57 NC_001847.1 + 9610 0.71 0.576167
Target:  5'- -cGGGGAcgaccguagcUGCGCcCGCCgCCGCGcCGGCc -3'
miRNA:   3'- gaUCUCU----------AUGUGaGCGG-GGCGC-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.