Results 1 - 20 of 358 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6678 | 5' | -57 | NC_001847.1 | + | 756 | 0.68 | 0.75684 |
Target: 5'- cCUAGGGcgAgGC-CGgCCCGCcgccgGCGGCg -3' miRNA: 3'- -GAUCUCuaUgUGaGCgGGGCG-----CGCCG- -5' |
|||||||
6678 | 5' | -57 | NC_001847.1 | + | 861 | 0.66 | 0.837139 |
Target: 5'- -aGGAGA-GCAC-C-UCCaCGCGCGGCg -3' miRNA: 3'- gaUCUCUaUGUGaGcGGG-GCGCGCCG- -5' |
|||||||
6678 | 5' | -57 | NC_001847.1 | + | 1334 | 0.75 | 0.372749 |
Target: 5'- --cGAGccccaGCGCcgCGCCCUGCGCGGCc -3' miRNA: 3'- gauCUCua---UGUGa-GCGGGGCGCGCCG- -5' |
|||||||
6678 | 5' | -57 | NC_001847.1 | + | 1430 | 0.67 | 0.811752 |
Target: 5'- ----cGGUGCGCggGCCCaggCGCGUGGCc -3' miRNA: 3'- gaucuCUAUGUGagCGGG---GCGCGCCG- -5' |
|||||||
6678 | 5' | -57 | NC_001847.1 | + | 1943 | 0.68 | 0.766318 |
Target: 5'- aCUcGGGccgccgGCGCUCGUCCuCGCcggGCGGCg -3' miRNA: 3'- -GAuCUCua----UGUGAGCGGG-GCG---CGCCG- -5' |
|||||||
6678 | 5' | -57 | NC_001847.1 | + | 2075 | 0.68 | 0.75684 |
Target: 5'- -cGGuGGcgGCGagCGCCCCGCGgGGCc -3' miRNA: 3'- gaUC-UCuaUGUgaGCGGGGCGCgCCG- -5' |
|||||||
6678 | 5' | -57 | NC_001847.1 | + | 2972 | 0.66 | 0.860861 |
Target: 5'- --uGAGAccgGCAUUUuauguucgcgGCCCCacccuGCGCGGCa -3' miRNA: 3'- gauCUCUa--UGUGAG----------CGGGG-----CGCGCCG- -5' |
|||||||
6678 | 5' | -57 | NC_001847.1 | + | 3259 | 0.67 | 0.794005 |
Target: 5'- -cGGcAGggGCGC-CGgCgCCGCGCGGCc -3' miRNA: 3'- gaUC-UCuaUGUGaGCgG-GGCGCGCCG- -5' |
|||||||
6678 | 5' | -57 | NC_001847.1 | + | 3953 | 0.67 | 0.802955 |
Target: 5'- -gGGGGggGCGC-CGUCuCCG-GCGGCg -3' miRNA: 3'- gaUCUCuaUGUGaGCGG-GGCgCGCCG- -5' |
|||||||
6678 | 5' | -57 | NC_001847.1 | + | 3985 | 0.74 | 0.406143 |
Target: 5'- -cGGGGGccggGCGCgcgGCCCCGCGgGGCg -3' miRNA: 3'- gaUCUCUa---UGUGag-CGGGGCGCgCCG- -5' |
|||||||
6678 | 5' | -57 | NC_001847.1 | + | 4280 | 0.68 | 0.765375 |
Target: 5'- cCUuGAGggGCGC-CGcCCCCGCcucggcuucgaugGCGGCg -3' miRNA: 3'- -GAuCUCuaUGUGaGC-GGGGCG-------------CGCCG- -5' |
|||||||
6678 | 5' | -57 | NC_001847.1 | + | 4441 | 0.7 | 0.667708 |
Target: 5'- -cAGGGAaACGCgcaCGCCgugaaaggCCGCGCGGUu -3' miRNA: 3'- gaUCUCUaUGUGa--GCGG--------GGCGCGCCG- -5' |
|||||||
6678 | 5' | -57 | NC_001847.1 | + | 5194 | 0.7 | 0.637163 |
Target: 5'- -gGGAGAaGCcCUCGCCggcucucucgCCGCgGCGGCc -3' miRNA: 3'- gaUCUCUaUGuGAGCGG----------GGCG-CGCCG- -5' |
|||||||
6678 | 5' | -57 | NC_001847.1 | + | 5661 | 0.74 | 0.423531 |
Target: 5'- -cAGcGGAUGCGCgcCGUCgCGCGCGGCg -3' miRNA: 3'- gaUC-UCUAUGUGa-GCGGgGCGCGCCG- -5' |
|||||||
6678 | 5' | -57 | NC_001847.1 | + | 6096 | 0.68 | 0.775678 |
Target: 5'- -cGGAGGcGCGagaCGCCCgcgagGCGCGGCg -3' miRNA: 3'- gaUCUCUaUGUga-GCGGGg----CGCGCCG- -5' |
|||||||
6678 | 5' | -57 | NC_001847.1 | + | 6334 | 0.68 | 0.737566 |
Target: 5'- -----cGUACGCgggUGCCCCG-GCGGCa -3' miRNA: 3'- gaucucUAUGUGa--GCGGGGCgCGCCG- -5' |
|||||||
6678 | 5' | -57 | NC_001847.1 | + | 8075 | 0.67 | 0.828013 |
Target: 5'- -cAGAGGgggGCAC-CGCCgCGgcgagaucggcgaCGCGGCg -3' miRNA: 3'- gaUCUCUa--UGUGaGCGGgGC-------------GCGCCG- -5' |
|||||||
6678 | 5' | -57 | NC_001847.1 | + | 8478 | 0.67 | 0.820387 |
Target: 5'- -gGGGGcgGCGCUCGgCCggggGCGgGGCc -3' miRNA: 3'- gaUCUCuaUGUGAGCgGGg---CGCgCCG- -5' |
|||||||
6678 | 5' | -57 | NC_001847.1 | + | 8576 | 0.66 | 0.868367 |
Target: 5'- -gGGAGGgcacagGCAaauCagGCCCCGCcagggGCGGCg -3' miRNA: 3'- gaUCUCUa-----UGU---GagCGGGGCG-----CGCCG- -5' |
|||||||
6678 | 5' | -57 | NC_001847.1 | + | 9610 | 0.71 | 0.576167 |
Target: 5'- -cGGGGAcgaccguagcUGCGCcCGCCgCCGCGcCGGCc -3' miRNA: 3'- gaUCUCU----------AUGUGaGCGG-GGCGC-GCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home