miRNA display CGI


Results 1 - 20 of 358 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6678 5' -57 NC_001847.1 + 135129 0.67 0.794005
Target:  5'- --cGGGGU-CGCagggGgCCCGCGCGGCg -3'
miRNA:   3'- gauCUCUAuGUGag--CgGGGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 134647 0.68 0.766318
Target:  5'- -gGGGGGUugGCgcgcggcCGCCCCGcCGCcGCc -3'
miRNA:   3'- gaUCUCUAugUGa------GCGGGGC-GCGcCG- -5'
6678 5' -57 NC_001847.1 + 134524 0.66 0.85315
Target:  5'- -gGGGGAgGCGCggGCCgCGCGCcGCu -3'
miRNA:   3'- gaUCUCUaUGUGagCGGgGCGCGcCG- -5'
6678 5' -57 NC_001847.1 + 134144 0.69 0.717926
Target:  5'- cCUGGuGGaGCGCgUGCCgCCGCcgGCGGCg -3'
miRNA:   3'- -GAUCuCUaUGUGaGCGG-GGCG--CGCCG- -5'
6678 5' -57 NC_001847.1 + 134103 0.73 0.4596
Target:  5'- --cGGGAgACGCUCGUgCUGCuGCGGCg -3'
miRNA:   3'- gauCUCUaUGUGAGCGgGGCG-CGCCG- -5'
6678 5' -57 NC_001847.1 + 134033 0.71 0.596415
Target:  5'- gCUGGAGGccgcggcgGCGC-CGCCCgCGgcCGCGGCg -3'
miRNA:   3'- -GAUCUCUa-------UGUGaGCGGG-GC--GCGCCG- -5'
6678 5' -57 NC_001847.1 + 133402 0.68 0.75684
Target:  5'- gUGGAG-UACcucugcgcgcgGCUgGCCgCgGCGCGGCg -3'
miRNA:   3'- gAUCUCuAUG-----------UGAgCGG-GgCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 133202 0.72 0.546109
Target:  5'- gCUGGAGGaGCuCUgCGCCgCGCGcCGGCu -3'
miRNA:   3'- -GAUCUCUaUGuGA-GCGGgGCGC-GCCG- -5'
6678 5' -57 NC_001847.1 + 133041 0.75 0.386712
Target:  5'- --cGAGAUcgcggcccgccgccGCGCggGCCCCGCGgGGCg -3'
miRNA:   3'- gauCUCUA--------------UGUGagCGGGGCGCgCCG- -5'
6678 5' -57 NC_001847.1 + 132953 0.7 0.647359
Target:  5'- --uGAGGUGCGCcCGCaCgCCGCccagGCGGCg -3'
miRNA:   3'- gauCUCUAUGUGaGCG-G-GGCG----CGCCG- -5'
6678 5' -57 NC_001847.1 + 132936 0.66 0.85315
Target:  5'- gCUGGcGGccUACuGC-CGCCCCGagguCGCGGCg -3'
miRNA:   3'- -GAUCuCU--AUG-UGaGCGGGGC----GCGCCG- -5'
6678 5' -57 NC_001847.1 + 132900 0.67 0.828852
Target:  5'- -cGGGGAcuaccACACgcccgCGCCCagCGcCGCGGCg -3'
miRNA:   3'- gaUCUCUa----UGUGa----GCGGG--GC-GCGCCG- -5'
6678 5' -57 NC_001847.1 + 132382 0.66 0.837139
Target:  5'- -cGGGGGcgccgGCGCcggCGCCgCCGCGCcgGGCc -3'
miRNA:   3'- gaUCUCUa----UGUGa--GCGG-GGCGCG--CCG- -5'
6678 5' -57 NC_001847.1 + 131860 0.75 0.388377
Target:  5'- --cGAGcUGCgcgccguGCUCGCCggCCGCGCGGCg -3'
miRNA:   3'- gauCUCuAUG-------UGAGCGG--GGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 131308 0.68 0.772883
Target:  5'- uCUGGGGcgGCgcgaacaacgccacGCUcgcggccgaCGCCCCGUGcCGGCa -3'
miRNA:   3'- -GAUCUCuaUG--------------UGA---------GCGGGGCGC-GCCG- -5'
6678 5' -57 NC_001847.1 + 131197 0.73 0.4596
Target:  5'- -cGGAGAcgGCGCcCcCCCCGcCGCGGCg -3'
miRNA:   3'- gaUCUCUa-UGUGaGcGGGGC-GCGCCG- -5'
6678 5' -57 NC_001847.1 + 131131 0.74 0.397619
Target:  5'- -gAGAGGcggGCGCcgggcccggCGCCCCGCGgGGCc -3'
miRNA:   3'- gaUCUCUa--UGUGa--------GCGGGGCGCgCCG- -5'
6678 5' -57 NC_001847.1 + 130220 0.71 0.5661
Target:  5'- -gGGGGGcGCugUUGCCgCCgGCGCGGUc -3'
miRNA:   3'- gaUCUCUaUGugAGCGG-GG-CGCGCCG- -5'
6678 5' -57 NC_001847.1 + 129922 0.66 0.84524
Target:  5'- -------cGCGCgCGCCCCGCcggccgccGCGGCg -3'
miRNA:   3'- gaucucuaUGUGaGCGGGGCG--------CGCCG- -5'
6678 5' -57 NC_001847.1 + 129911 0.67 0.784909
Target:  5'- -cGGAGAccUGCACggaGCCaugcgcagcuuCCGuCGCGGCg -3'
miRNA:   3'- gaUCUCU--AUGUGag-CGG-----------GGC-GCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.