miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6678 5' -57 NC_001847.1 + 78034 0.83 0.128631
Target:  5'- -gGGAGGUcauaaaggucucGCGCUCGCCCCuCGCGGCc -3'
miRNA:   3'- gaUCUCUA------------UGUGAGCGGGGcGCGCCG- -5'
6678 5' -57 NC_001847.1 + 106797 0.73 0.450428
Target:  5'- -cGGGGGcccggGCGCgcgGCCCCGCGgGGCg -3'
miRNA:   3'- gaUCUCUa----UGUGag-CGGGGCGCgCCG- -5'
6678 5' -57 NC_001847.1 + 11350 0.73 0.450428
Target:  5'- --cGGGA-GCACUCGUacgcgcggCCGCGCGGCg -3'
miRNA:   3'- gauCUCUaUGUGAGCGg-------GGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 71075 0.74 0.43239
Target:  5'- gCUGGcg--GCGCUCGgCCgGCGCGGCc -3'
miRNA:   3'- -GAUCucuaUGUGAGCgGGgCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 5661 0.74 0.423531
Target:  5'- -cAGcGGAUGCGCgcCGUCgCGCGCGGCg -3'
miRNA:   3'- gaUC-UCUAUGUGa-GCGGgGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 32885 0.74 0.414781
Target:  5'- gCUGGAGG-GCACggugcgCGCCgCGCGCGaGCg -3'
miRNA:   3'- -GAUCUCUaUGUGa-----GCGGgGCGCGC-CG- -5'
6678 5' -57 NC_001847.1 + 125457 0.74 0.406143
Target:  5'- -cGGGGAggGCggGCUUGCCCCGgGCGGg -3'
miRNA:   3'- gaUCUCUa-UG--UGAGCGGGGCgCGCCg -5'
6678 5' -57 NC_001847.1 + 33685 0.74 0.397619
Target:  5'- gCUAGAGGcgcagGCGCUCGCggCGCGgCGGCg -3'
miRNA:   3'- -GAUCUCUa----UGUGAGCGggGCGC-GCCG- -5'
6678 5' -57 NC_001847.1 + 131131 0.74 0.397619
Target:  5'- -gAGAGGcggGCGCcgggcccggCGCCCCGCGgGGCc -3'
miRNA:   3'- gaUCUCUa--UGUGa--------GCGGGGCGCgCCG- -5'
6678 5' -57 NC_001847.1 + 101445 0.74 0.397619
Target:  5'- gCUGGGGG-GCGCggaaacUGCCgCCGCGCGGCc -3'
miRNA:   3'- -GAUCUCUaUGUGa-----GCGG-GGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 131860 0.75 0.388377
Target:  5'- --cGAGcUGCgcgccguGCUCGCCggCCGCGCGGCg -3'
miRNA:   3'- gauCUCuAUG-------UGAGCGG--GGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 133041 0.75 0.386712
Target:  5'- --cGAGAUcgcggcccgccgccGCGCggGCCCCGCGgGGCg -3'
miRNA:   3'- gauCUCUA--------------UGUGagCGGGGCGCgCCG- -5'
6678 5' -57 NC_001847.1 + 104147 0.75 0.372749
Target:  5'- --cGAGccccaGCGCcgCGCCCUGCGCGGCc -3'
miRNA:   3'- gauCUCua---UGUGa-GCGGGGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 55742 0.76 0.326268
Target:  5'- -cGGuGGUccgGCUCGCgCCCGCGCGGCc -3'
miRNA:   3'- gaUCuCUAug-UGAGCG-GGGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 14814 0.76 0.326268
Target:  5'- -cGGAGcUGCGCggCGCCCugCGCGCGGUg -3'
miRNA:   3'- gaUCUCuAUGUGa-GCGGG--GCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 43580 0.76 0.318952
Target:  5'- --cGGGcgACGCgCGCCCCaGCGUGGCg -3'
miRNA:   3'- gauCUCuaUGUGaGCGGGG-CGCGCCG- -5'
6678 5' -57 NC_001847.1 + 99511 0.77 0.304692
Target:  5'- cCUGGAGuuUGCGCcgaGCCCCGCGCcGCg -3'
miRNA:   3'- -GAUCUCu-AUGUGag-CGGGGCGCGcCG- -5'
6678 5' -57 NC_001847.1 + 124325 0.77 0.297747
Target:  5'- aUAGAGAgGCAaggcgCGCCUgCGCGCGGCg -3'
miRNA:   3'- gAUCUCUaUGUga---GCGGG-GCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 54101 0.77 0.277652
Target:  5'- cCUAGAG--GCGCUCGCCgCGCGggaGGCg -3'
miRNA:   3'- -GAUCUCuaUGUGAGCGGgGCGCg--CCG- -5'
6678 5' -57 NC_001847.1 + 118733 1.12 0.001418
Target:  5'- aCUAGAGAUACACUCGCCCCGCGCGGCu -3'
miRNA:   3'- -GAUCUCUAUGUGAGCGGGGCGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.