miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6678 5' -57 NC_001847.1 + 102235 0.66 0.868367
Target:  5'- --cGGGAcgGCGuCcaggCGCUCgCGCGCGGCg -3'
miRNA:   3'- gauCUCUa-UGU-Ga---GCGGG-GCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 85399 0.66 0.84524
Target:  5'- --cGGGGUacagcggcacgcGCAC-CGCCUCGC-CGGCg -3'
miRNA:   3'- gauCUCUA------------UGUGaGCGGGGCGcGCCG- -5'
6678 5' -57 NC_001847.1 + 93493 0.66 0.84524
Target:  5'- -cAGGGGUACuuCUCGCggcccCCCGgcgcgccgcuCGCGGCc -3'
miRNA:   3'- gaUCUCUAUGu-GAGCG-----GGGC----------GCGCCG- -5'
6678 5' -57 NC_001847.1 + 110889 0.8 0.202929
Target:  5'- aUGGAcAUGCuCUCGCCcgCCGCGCGGCg -3'
miRNA:   3'- gAUCUcUAUGuGAGCGG--GGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 101243 0.66 0.868367
Target:  5'- -cAGGcGGUccuGCACgcccgCGgCCaCGCGCGGCg -3'
miRNA:   3'- gaUCU-CUA---UGUGa----GCgGG-GCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 8576 0.66 0.868367
Target:  5'- -gGGAGGgcacagGCAaauCagGCCCCGCcagggGCGGCg -3'
miRNA:   3'- gaUCUCUa-----UGU---GagCGGGGCG-----CGCCG- -5'
6678 5' -57 NC_001847.1 + 26869 0.66 0.860861
Target:  5'- -aGGAGAgagACGCggcCGCCaCCGcCGUcgGGCa -3'
miRNA:   3'- gaUCUCUa--UGUGa--GCGG-GGC-GCG--CCG- -5'
6678 5' -57 NC_001847.1 + 98750 0.66 0.860861
Target:  5'- --cGAG-UGCACcgUCGCCgCgGCGCGcGCu -3'
miRNA:   3'- gauCUCuAUGUG--AGCGG-GgCGCGC-CG- -5'
6678 5' -57 NC_001847.1 + 59611 0.66 0.85315
Target:  5'- --cGAGAUcGCGCggugCGCCgUGCGCuGCu -3'
miRNA:   3'- gauCUCUA-UGUGa---GCGGgGCGCGcCG- -5'
6678 5' -57 NC_001847.1 + 47035 0.66 0.850798
Target:  5'- -cAGGcGAUACaACUCGCggugcgugucgcggCCgGCGCGGUc -3'
miRNA:   3'- gaUCU-CUAUG-UGAGCG--------------GGgCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 31711 0.66 0.85315
Target:  5'- -gGGGGAgGCGCggGCCgCGCGCcGCu -3'
miRNA:   3'- gaUCUCUaUGUGagCGGgGCGCGcCG- -5'
6678 5' -57 NC_001847.1 + 53692 0.66 0.85315
Target:  5'- -aAGAuGUGCGCgcgcgagCGCgCCGCcgGCGGCu -3'
miRNA:   3'- gaUCUcUAUGUGa------GCGgGGCG--CGCCG- -5'
6678 5' -57 NC_001847.1 + 125541 0.66 0.868367
Target:  5'- ---cAGcUACGgUCGUCCC-CGCGGCu -3'
miRNA:   3'- gaucUCuAUGUgAGCGGGGcGCGCCG- -5'
6678 5' -57 NC_001847.1 + 30123 0.66 0.85315
Target:  5'- gCUGGcGGccUACuGC-CGCCCCGagguCGCGGCg -3'
miRNA:   3'- -GAUCuCU--AUG-UGaGCGGGGC----GCGCCG- -5'
6678 5' -57 NC_001847.1 + 120155 0.66 0.868367
Target:  5'- --cGAGggGCGCUUGCCaagcuUGCGCaGCa -3'
miRNA:   3'- gauCUCuaUGUGAGCGGg----GCGCGcCG- -5'
6678 5' -57 NC_001847.1 + 72702 0.66 0.860861
Target:  5'- -gGGAGAgcgGC-CGCCCgGUggGCGGCa -3'
miRNA:   3'- gaUCUCUaugUGaGCGGGgCG--CGCCG- -5'
6678 5' -57 NC_001847.1 + 93600 0.66 0.85315
Target:  5'- gCUGGAGAagauCAa--GgCCCGCGgCGGCa -3'
miRNA:   3'- -GAUCUCUau--GUgagCgGGGCGC-GCCG- -5'
6678 5' -57 NC_001847.1 + 50830 0.66 0.84524
Target:  5'- -cGGGGggGCGCUgccCGCgCCGgGgGGCg -3'
miRNA:   3'- gaUCUCuaUGUGA---GCGgGGCgCgCCG- -5'
6678 5' -57 NC_001847.1 + 86927 0.66 0.868367
Target:  5'- aUGGuGGcggcgcUGCGCUCcucgGCCCUggccgccgGCGCGGCa -3'
miRNA:   3'- gAUCuCU------AUGUGAG----CGGGG--------CGCGCCG- -5'
6678 5' -57 NC_001847.1 + 16875 0.66 0.867626
Target:  5'- cCUGGAGAgacauCACcaccaccgcugcgUCGCCggucUCGCGCGGg -3'
miRNA:   3'- -GAUCUCUau---GUG-------------AGCGG----GGCGCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.