miRNA display CGI


Results 21 - 40 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6678 5' -57 NC_001847.1 + 9710 0.67 0.828852
Target:  5'- -------cGgACgCGCCCUGCGCGGCc -3'
miRNA:   3'- gaucucuaUgUGaGCGGGGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 10287 0.68 0.75684
Target:  5'- --cGGGccgcGCGCUCGCCagucaGUGCGGCg -3'
miRNA:   3'- gauCUCua--UGUGAGCGGgg---CGCGCCG- -5'
6678 5' -57 NC_001847.1 + 10677 0.7 0.623902
Target:  5'- -cGGGGG---GCUCGCCCUccggucgcgcccggGCGCGGCc -3'
miRNA:   3'- gaUCUCUaugUGAGCGGGG--------------CGCGCCG- -5'
6678 5' -57 NC_001847.1 + 11181 0.69 0.697995
Target:  5'- gCUGGGGcUGcCGCUgGUCCgCGCGgGGCu -3'
miRNA:   3'- -GAUCUCuAU-GUGAgCGGG-GCGCgCCG- -5'
6678 5' -57 NC_001847.1 + 11350 0.73 0.450428
Target:  5'- --cGGGA-GCACUCGUacgcgcggCCGCGCGGCg -3'
miRNA:   3'- gauCUCUaUGUGAGCGg-------GGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 11837 0.66 0.85315
Target:  5'- uCUGGcguaAGGccucugGCGC-CGCCCUGCggGCGGCg -3'
miRNA:   3'- -GAUC----UCUa-----UGUGaGCGGGGCG--CGCCG- -5'
6678 5' -57 NC_001847.1 + 11961 0.7 0.616765
Target:  5'- gCUAGGGAUGgGCggcugagCGCCgCCGCGCcGUc -3'
miRNA:   3'- -GAUCUCUAUgUGa------GCGG-GGCGCGcCG- -5'
6678 5' -57 NC_001847.1 + 12207 0.68 0.737566
Target:  5'- ---uAGGUGCGCUucUGgCuuGCGCGGCg -3'
miRNA:   3'- gaucUCUAUGUGA--GCgGggCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 12983 0.74 0.413044
Target:  5'- gCUGGuucccucuC-CUCGUCCCGCGCGGCg -3'
miRNA:   3'- -GAUCucuau---GuGAGCGGGGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 13829 0.73 0.4596
Target:  5'- --cGAGAU-CGUUUGCCgCGCGCGGCg -3'
miRNA:   3'- gauCUCUAuGUGAGCGGgGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 13918 0.66 0.837139
Target:  5'- gCUGGG---GCGCUCgguGCCgCGcCGCGGCa -3'
miRNA:   3'- -GAUCUcuaUGUGAG---CGGgGC-GCGCCG- -5'
6678 5' -57 NC_001847.1 + 14362 0.7 0.657543
Target:  5'- -cGGGGA-ACGC-CGCCagCGCGCGGUc -3'
miRNA:   3'- gaUCUCUaUGUGaGCGGg-GCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 14814 0.76 0.326268
Target:  5'- -cGGAGcUGCGCggCGCCCugCGCGCGGUg -3'
miRNA:   3'- gaUCUCuAUGUGa-GCGGG--GCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 15055 0.74 0.414781
Target:  5'- -------gGCGCUuuaucuccCGCCCCGCGCGGCu -3'
miRNA:   3'- gaucucuaUGUGA--------GCGGGGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 15099 0.66 0.868367
Target:  5'- -cGGGGccGCGCUCaugcugacgGCCCUGacgGCGGCg -3'
miRNA:   3'- gaUCUCuaUGUGAG---------CGGGGCg--CGCCG- -5'
6678 5' -57 NC_001847.1 + 15287 0.67 0.802955
Target:  5'- --uGGGGUACgccuGCUgGCUgCGCGCGGg -3'
miRNA:   3'- gauCUCUAUG----UGAgCGGgGCGCGCCg -5'
6678 5' -57 NC_001847.1 + 15744 0.69 0.694984
Target:  5'- cCUGGAGGgcgccuaugccgACGCgggcggcccgcuuUCGCCggcggcaagcgCCGCGCGGCg -3'
miRNA:   3'- -GAUCUCUa-----------UGUG-------------AGCGG-----------GGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 15987 0.66 0.868367
Target:  5'- --------cCGC-CGCCCCGCgGCGGCc -3'
miRNA:   3'- gaucucuauGUGaGCGGGGCG-CGCCG- -5'
6678 5' -57 NC_001847.1 + 16047 0.66 0.868367
Target:  5'- --------cCGC-CGCCCCGCgGCGGCc -3'
miRNA:   3'- gaucucuauGUGaGCGGGGCG-CGCCG- -5'
6678 5' -57 NC_001847.1 + 16626 0.66 0.871311
Target:  5'- uUGGGGGgggGCGCggCggcuuugccgucgggGCCCCGCGCcuacaGGCg -3'
miRNA:   3'- gAUCUCUa--UGUGa-G---------------CGGGGCGCG-----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.