miRNA display CGI

Results 41 - 60 of 1312 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6680	5'	-63	NC_001847.1	+	130904	0.66	0.570994
	Target:  5'- --gGCGGgGGGCGGCGgUGCccucGGgGCCa -3' miRNA:   3'- gagCGUCgCUCGCCGC-GCGc---UCgCGG- -5'
6680	5'	-63	NC_001847.1	+	31739	0.66	0.542118
	Target:  5'- --aGCccuauGuCGAGCGGCGCGUGgucAGCGUg -3' miRNA:   3'- gagCGu----C-GCUCGCCGCGCGC---UCGCGg -5'
6680	5'	-63	NC_001847.1	+	18765	0.66	0.561322
	Target:  5'- -cCGCGGCuaaGGCGGCggccgacaGCGCGAGCu-- -3' miRNA:   3'- gaGCGUCGc--UCGCCG--------CGCGCUCGcgg -5'
6680	5'	-63	NC_001847.1	+	20505	0.66	0.570994
	Target:  5'- gCUCGC-GCGucGUcGCGgGCGGGgGCCc -3' miRNA:   3'- -GAGCGuCGCu-CGcCGCgCGCUCgCGG- -5'
6680	5'	-63	NC_001847.1	+	18172	0.66	0.560357
	Target:  5'- gCUCGCcccAGCGggcccauGGCGGaCGCGCG-GCGa- -3' miRNA:   3'- -GAGCG---UCGC-------UCGCC-GCGCGCuCGCgg -5'
6680	5'	-63	NC_001847.1	+	11325	0.66	0.551694
	Target:  5'- --gGcCGGCGGGCGGCugGCGCcgGAGCGg- -3' miRNA:   3'- gagC-GUCGCUCGCCG--CGCG--CUCGCgg -5'
6680	5'	-63	NC_001847.1	+	97440	0.66	0.551694
	Target:  5'- gUUGCuGCGcAGCcGCGCGCcgcagccGCGCCa -3' miRNA:   3'- gAGCGuCGC-UCGcCGCGCGcu-----CGCGG- -5'
6680	5'	-63	NC_001847.1	+	11803	0.66	0.570994
	Target:  5'- uUCGaccCGGCGcGUGGCGUuuGCGAG-GCCu -3' miRNA:   3'- gAGC---GUCGCuCGCCGCG--CGCUCgCGG- -5'
6680	5'	-63	NC_001847.1	+	37182	0.66	0.570994
	Target:  5'- cCUCGCGcCGGGagagccCGGUGCGa-GGCGCCc -3' miRNA:   3'- -GAGCGUcGCUC------GCCGCGCgcUCGCGG- -5'
6680	5'	-63	NC_001847.1	+	4190	0.66	0.551694
	Target:  5'- -gCGCGcccGUGGGCcGCGCGCaGGCaGCCa -3' miRNA:   3'- gaGCGU---CGCUCGcCGCGCGcUCG-CGG- -5'
6680	5'	-63	NC_001847.1	+	102680	0.66	0.570994
	Target:  5'- -nCGgGG-GGGCGGgGCGggggcaGGGCGCCg -3' miRNA:   3'- gaGCgUCgCUCGCCgCGCg-----CUCGCGG- -5'
6680	5'	-63	NC_001847.1	+	81040	0.66	0.570994
	Target:  5'- -cCGCGgacuGCGGG-GGCGaCGUGGGCGUg -3' miRNA:   3'- gaGCGU----CGCUCgCCGC-GCGCUCGCGg -5'
6680	5'	-63	NC_001847.1	+	105087	0.66	0.542118
	Target:  5'- -aCGCGGCGgaagccgccgucGGCGGCGgggcCGCcGGGCGgCa -3' miRNA:   3'- gaGCGUCGC------------UCGCCGC----GCG-CUCGCgG- -5'
6680	5'	-63	NC_001847.1	+	124918	0.66	0.542118
	Target:  5'- -gCGCGcCGGG-GGCGacaGCGGGCGCg -3' miRNA:   3'- gaGCGUcGCUCgCCGCg--CGCUCGCGg -5'
6680	5'	-63	NC_001847.1	+	30944	0.66	0.551694
	Target:  5'- uUCGCAuaaaCGGcGCuGCGCGCGcGGUGCCc -3' miRNA:   3'- gAGCGUc---GCU-CGcCGCGCGC-UCGCGG- -5'
6680	5'	-63	NC_001847.1	+	10778	0.66	0.570994
	Target:  5'- -gCGCGGgaaGAGCGGUaCGCGGGC-CUg -3' miRNA:   3'- gaGCGUCg--CUCGCCGcGCGCUCGcGG- -5'
6680	5'	-63	NC_001847.1	+	3816	0.66	0.570994
	Target:  5'- -aCGgGGCGu-CGGC-CGCGAGCGUg -3' miRNA:   3'- gaGCgUCGCucGCCGcGCGCUCGCGg -5'
6680	5'	-63	NC_001847.1	+	85640	0.66	0.570994
	Target:  5'- -gCGCccGGCGaAGCGGCGCcgaucaggGUGAucagcagcagcaGCGCCa -3' miRNA:   3'- gaGCG--UCGC-UCGCCGCG--------CGCU------------CGCGG- -5'
6680	5'	-63	NC_001847.1	+	28336	0.66	0.551694
	Target:  5'- gCUCGcCGGCGGGCaGCGCGgcCGucaucCGCCc -3' miRNA:   3'- -GAGC-GUCGCUCGcCGCGC--GCuc---GCGG- -5'
6680	5'	-63	NC_001847.1	+	78973	0.66	0.580706
	Target:  5'- -gCGCAGCcucGGgGGCGUGCucGGGCGgCu -3' miRNA:   3'- gaGCGUCGc--UCgCCGCGCG--CUCGCgG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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