miRNA display CGI


Results 21 - 40 of 1312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6680 5' -63 NC_001847.1 + 49302 0.66 0.551694
Target:  5'- aCUCGCuGCuGGCGGUgcugccccugguGCGCGGGC-UCa -3'
miRNA:   3'- -GAGCGuCGcUCGCCG------------CGCGCUCGcGG- -5'
6680 5' -63 NC_001847.1 + 44193 0.66 0.542118
Target:  5'- -cCGCGGgGAGCGcCGC-CGAGCuagagaGCCa -3'
miRNA:   3'- gaGCGUCgCUCGCcGCGcGCUCG------CGG- -5'
6680 5' -63 NC_001847.1 + 11325 0.66 0.551694
Target:  5'- --gGcCGGCGGGCGGCugGCGCcgGAGCGg- -3'
miRNA:   3'- gagC-GUCGCUCGCCG--CGCG--CUCGCgg -5'
6680 5' -63 NC_001847.1 + 2737 0.66 0.542118
Target:  5'- -aCGgAGCGcagGGCGGgaGCGagcgaGGGCGCCu -3'
miRNA:   3'- gaGCgUCGC---UCGCCg-CGCg----CUCGCGG- -5'
6680 5' -63 NC_001847.1 + 51970 0.66 0.561322
Target:  5'- --gGCAGUGAuGCacugGGUGCGCcGGCGCa -3'
miRNA:   3'- gagCGUCGCU-CG----CCGCGCGcUCGCGg -5'
6680 5' -63 NC_001847.1 + 92205 0.66 0.561322
Target:  5'- -gCGCGGCGucggccgcuugGGCGGCcaGCaGCGcGCGCUc -3'
miRNA:   3'- gaGCGUCGC-----------UCGCCG--CG-CGCuCGCGG- -5'
6680 5' -63 NC_001847.1 + 25193 0.66 0.551694
Target:  5'- gCUgGcCAGCGAGCcccGCGCGCGGcCGgCa -3'
miRNA:   3'- -GAgC-GUCGCUCGc--CGCGCGCUcGCgG- -5'
6680 5' -63 NC_001847.1 + 97440 0.66 0.551694
Target:  5'- gUUGCuGCGcAGCcGCGCGCcgcagccGCGCCa -3'
miRNA:   3'- gAGCGuCGC-UCGcCGCGCGcu-----CGCGG- -5'
6680 5' -63 NC_001847.1 + 29936 0.66 0.551694
Target:  5'- -cCGCGGUGGGCGGuUGUgucuucuuaGCGAGCauguaccugcacGCCg -3'
miRNA:   3'- gaGCGUCGCUCGCC-GCG---------CGCUCG------------CGG- -5'
6680 5' -63 NC_001847.1 + 18765 0.66 0.561322
Target:  5'- -cCGCGGCuaaGGCGGCggccgacaGCGCGAGCu-- -3'
miRNA:   3'- gaGCGUCGc--UCGCCG--------CGCGCUCGcgg -5'
6680 5' -63 NC_001847.1 + 4190 0.66 0.551694
Target:  5'- -gCGCGcccGUGGGCcGCGCGCaGGCaGCCa -3'
miRNA:   3'- gaGCGU---CGCUCGcCGCGCGcUCG-CGG- -5'
6680 5' -63 NC_001847.1 + 20611 0.66 0.542118
Target:  5'- cCUCGCGGCuaaAGaccaaaaaGGCGUuucgcaGCGAGgCGCCa -3'
miRNA:   3'- -GAGCGUCGc--UCg-------CCGCG------CGCUC-GCGG- -5'
6680 5' -63 NC_001847.1 + 21513 0.66 0.542118
Target:  5'- -gCGCcucGGCGGG-GGcCGCGCGGgccaacGCGCCc -3'
miRNA:   3'- gaGCG---UCGCUCgCC-GCGCGCU------CGCGG- -5'
6680 5' -63 NC_001847.1 + 32857 0.66 0.560357
Target:  5'- -cCGCGGCGcuC-GCGCGCGAgauccugGCGCUg -3'
miRNA:   3'- gaGCGUCGCucGcCGCGCGCU-------CGCGG- -5'
6680 5' -63 NC_001847.1 + 30944 0.66 0.551694
Target:  5'- uUCGCAuaaaCGGcGCuGCGCGCGcGGUGCCc -3'
miRNA:   3'- gAGCGUc---GCU-CGcCGCGCGC-UCGCGG- -5'
6680 5' -63 NC_001847.1 + 35622 0.66 0.542118
Target:  5'- -cCGCcGCcGGCGGCGCugggGCcAGCGCUg -3'
miRNA:   3'- gaGCGuCGcUCGCCGCG----CGcUCGCGG- -5'
6680 5' -63 NC_001847.1 + 80577 0.66 0.561322
Target:  5'- gCUCGCGcGCGucaCGG-GCGCGAcuGCGUCu -3'
miRNA:   3'- -GAGCGU-CGCuc-GCCgCGCGCU--CGCGG- -5'
6680 5' -63 NC_001847.1 + 85052 0.66 0.561322
Target:  5'- --aGCAGCuggccGAGCaucaGGgGCGCG-GUGCCa -3'
miRNA:   3'- gagCGUCG-----CUCG----CCgCGCGCuCGCGG- -5'
6680 5' -63 NC_001847.1 + 87403 0.66 0.551694
Target:  5'- aCUUGCGcGCGGGCGGggccccgcccgcCGCGCucgaaGAGCuGCUg -3'
miRNA:   3'- -GAGCGU-CGCUCGCC------------GCGCG-----CUCG-CGG- -5'
6680 5' -63 NC_001847.1 + 133417 0.66 0.542118
Target:  5'- -gCGCGGCuGGccGCGGCGCGgCG-GCGgCu -3'
miRNA:   3'- gaGCGUCG-CU--CGCCGCGC-GCuCGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.