miRNA display CGI

Results 21 - 40 of 1312 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6680	5'	-63	NC_001847.1	+	32895	0.82	0.055472
	Target:  5'- -aCGguGCGcGCcGCGCGCGAGCGCCu -3' miRNA:   3'- gaGCguCGCuCGcCGCGCGCUCGCGG- -5'
6680	5'	-63	NC_001847.1	+	20899	0.82	0.055472
	Target:  5'- --gGCAGCGAGCGcgucGCGgGCGAGCGCUa -3' miRNA:   3'- gagCGUCGCUCGC----CGCgCGCUCGCGG- -5'
6680	5'	-63	NC_001847.1	+	14656	0.82	0.058424
	Target:  5'- gCUCGCuGCGAGCGGgGCGCGugucGGCGUg -3' miRNA:   3'- -GAGCGuCGCUCGCCgCGCGC----UCGCGg -5'
6680	5'	-63	NC_001847.1	+	31106	0.82	0.059957
	Target:  5'- cCUgGCcuGCGGGCGGCGCGCGcuggagcuGGCGCCc -3' miRNA:   3'- -GAgCGu-CGCUCGCCGCGCGC--------UCGCGG- -5'
6680	5'	-63	NC_001847.1	+	133919	0.82	0.059957
	Target:  5'- cCUgGCcuGCGGGCGGCGCGCGcuggagcuGGCGCCc -3' miRNA:   3'- -GAgCGu-CGCUCGCCGCGCGC--------UCGCGG- -5'
6680	5'	-63	NC_001847.1	+	106705	0.81	0.062976
	Target:  5'- -gCGCGGCGccGCGGCguagccaGCGCGGGCGCCg -3' miRNA:   3'- gaGCGUCGCu-CGCCG-------CGCGCUCGCGG- -5'
6680	5'	-63	NC_001847.1	+	3892	0.81	0.062976
	Target:  5'- -gCGCGGCGccGCGGCguagccaGCGCGGGCGCCg -3' miRNA:   3'- gaGCGUCGCu-CGCCG-------CGCGCUCGCGG- -5'
6680	5'	-63	NC_001847.1	+	67290	0.81	0.063139
	Target:  5'- -gCGCGucGCGAGCGcGCGCGCcAGCGCCg -3' miRNA:   3'- gaGCGU--CGCUCGC-CGCGCGcUCGCGG- -5'
6680	5'	-63	NC_001847.1	+	96341	0.81	0.063139
	Target:  5'- --gGCGGCGGGCuGGCGUGCGAcGCGCUg -3' miRNA:   3'- gagCGUCGCUCG-CCGCGCGCU-CGCGG- -5'
6680	5'	-63	NC_001847.1	+	8090	0.81	0.068221
	Target:  5'- -cCGCGGCGAGauCGGCGaCGCG-GCGCCa -3' miRNA:   3'- gaGCGUCGCUC--GCCGC-GCGCuCGCGG- -5'
6680	5'	-63	NC_001847.1	+	55345	0.81	0.068221
	Target:  5'- gCUCGCGGCGGuGCugaacGCGcCGCGGGCGCCg -3' miRNA:   3'- -GAGCGUCGCU-CGc----CGC-GCGCUCGCGG- -5'
6680	5'	-63	NC_001847.1	+	98834	0.81	0.068221
	Target:  5'- cCUCGCGGCGgcgguggcAGCGGCGCGCGAacuucGUGCg -3' miRNA:   3'- -GAGCGUCGC--------UCGCCGCGCGCU-----CGCGg -5'
6680	5'	-63	NC_001847.1	+	52613	0.8	0.071825
	Target:  5'- --gGCGGCGccuuugacuucGGCGcGUGCGCGAGCGCCg -3' miRNA:   3'- gagCGUCGC-----------UCGC-CGCGCGCUCGCGG- -5'
6680	5'	-63	NC_001847.1	+	45205	0.8	0.073695
	Target:  5'- uCUCGCAgcGCGAGCGcCGcCGCGAGCGCg -3' miRNA:   3'- -GAGCGU--CGCUCGCcGC-GCGCUCGCGg -5'
6680	5'	-63	NC_001847.1	+	61454	0.8	0.073695
	Target:  5'- -gCGCGGCGAgGCGGuCGCGCaGcAGCGCCg -3' miRNA:   3'- gaGCGUCGCU-CGCC-GCGCG-C-UCGCGG- -5'
6680	5'	-63	NC_001847.1	+	10125	0.8	0.073695
	Target:  5'- uUCGCGGCGAGCGGgcccggccguaGCGCGAGCGg- -3' miRNA:   3'- gAGCGUCGCUCGCCg----------CGCGCUCGCgg -5'
6680	5'	-63	NC_001847.1	+	28005	0.8	0.073695
	Target:  5'- -cUGCAGCGcGCGGCGUGCcgcgcuuacGAGCGCCu -3' miRNA:   3'- gaGCGUCGCuCGCCGCGCG---------CUCGCGG- -5'
6680	5'	-63	NC_001847.1	+	79677	0.8	0.075418
	Target:  5'- --gGCAGCGGcuagcGCGGCGCGCGccccgccGGCGCCa -3' miRNA:   3'- gagCGUCGCU-----CGCCGCGCGC-------UCGCGG- -5'
6680	5'	-63	NC_001847.1	+	102997	0.8	0.075612
	Target:  5'- gUCGCGGCGuGCGcGgGCGCGgcGGCGCCc -3' miRNA:   3'- gAGCGUCGCuCGC-CgCGCGC--UCGCGG- -5'
6680	5'	-63	NC_001847.1	+	41632	0.8	0.077576
	Target:  5'- aUgGCcGCGAGCGGCGCGCcgGGGgGCCg -3' miRNA:   3'- gAgCGuCGCUCGCCGCGCG--CUCgCGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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