miRNA display CGI


Results 21 - 40 of 1312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6680 5' -63 NC_001847.1 + 1630 0.7 0.352184
Target:  5'- --gGCAGCaccGCGGCGCGCagguacacGuGCGCCu -3'
miRNA:   3'- gagCGUCGcu-CGCCGCGCG--------CuCGCGG- -5'
6680 5' -63 NC_001847.1 + 1736 0.68 0.450149
Target:  5'- -cCGCGGCcAGCcGCGCGCaGAgguacuccaccGCGCCg -3'
miRNA:   3'- gaGCGUCGcUCGcCGCGCG-CU-----------CGCGG- -5'
6680 5' -63 NC_001847.1 + 1814 0.66 0.570994
Target:  5'- -gCGCGcCGAGCgcgcucacguccGGCGCGCccguccAGCGCCc -3'
miRNA:   3'- gaGCGUcGCUCG------------CCGCGCGc-----UCGCGG- -5'
6680 5' -63 NC_001847.1 + 1901 0.73 0.241
Target:  5'- -gCGCcGCGAGC-GCGUGCGAGagccCGCCg -3'
miRNA:   3'- gaGCGuCGCUCGcCGCGCGCUC----GCGG- -5'
6680 5' -63 NC_001847.1 + 1924 0.71 0.295113
Target:  5'- --gGUGGCGAGgcuuagcCGGCGCGCG-GCGCa -3'
miRNA:   3'- gagCGUCGCUC-------GCCGCGCGCuCGCGg -5'
6680 5' -63 NC_001847.1 + 1927 0.67 0.523137
Target:  5'- -nCGCGGCGcGGCGGCcacuCGGGcCGCCg -3'
miRNA:   3'- gaGCGUCGC-UCGCCGcgc-GCUC-GCGG- -5'
6680 5' -63 NC_001847.1 + 1964 0.77 0.125504
Target:  5'- cCUCGC--CGGGCGGCGcCGCcAGCGCCu -3'
miRNA:   3'- -GAGCGucGCUCGCCGC-GCGcUCGCGG- -5'
6680 5' -63 NC_001847.1 + 2069 0.83 0.045048
Target:  5'- -cCGCAGCG-GUGGCG-GCGAGCGCCc -3'
miRNA:   3'- gaGCGUCGCuCGCCGCgCGCUCGCGG- -5'
6680 5' -63 NC_001847.1 + 2134 0.73 0.241
Target:  5'- cCUCGgGGuCGAagGCGaGCGC-CGGGCGCCa -3'
miRNA:   3'- -GAGCgUC-GCU--CGC-CGCGcGCUCGCGG- -5'
6680 5' -63 NC_001847.1 + 2167 0.7 0.352184
Target:  5'- gCUCGgggaagAGCGGGUGGUcCGCGAgccGCGCCg -3'
miRNA:   3'- -GAGCg-----UCGCUCGCCGcGCGCU---CGCGG- -5'
6680 5' -63 NC_001847.1 + 2170 0.89 0.017428
Target:  5'- uCUCGCAGCGcccgcgccgccugGGCGGCGUGCGGGCGCa -3'
miRNA:   3'- -GAGCGUCGC-------------UCGCCGCGCGCUCGCGg -5'
6680 5' -63 NC_001847.1 + 2224 0.7 0.359749
Target:  5'- -cCGcCAGCGccGCGGCgcuggGCGCGGGCGUg -3'
miRNA:   3'- gaGC-GUCGCu-CGCCG-----CGCGCUCGCGg -5'
6680 5' -63 NC_001847.1 + 2274 0.66 0.542118
Target:  5'- -aCGCGGCGgaagccgccgucGGCGGCGgggcCGCcGGGCGgCa -3'
miRNA:   3'- gaGCGUCGC------------UCGCCGC----GCG-CUCGCgG- -5'
6680 5' -63 NC_001847.1 + 2337 0.67 0.504418
Target:  5'- --gGCAGCG-GCGGCuccCGCc-GCGCCg -3'
miRNA:   3'- gagCGUCGCuCGCCGc--GCGcuCGCGG- -5'
6680 5' -63 NC_001847.1 + 2372 0.7 0.344732
Target:  5'- gUCgGCGGCG-GCGGCuuuuCGCcGGCGCCu -3'
miRNA:   3'- gAG-CGUCGCuCGCCGc---GCGcUCGCGG- -5'
6680 5' -63 NC_001847.1 + 2451 0.74 0.189883
Target:  5'- -cCGCAGCGAGCucccgaucgagcgGGCG-GCG-GCGCCc -3'
miRNA:   3'- gaGCGUCGCUCG-------------CCGCgCGCuCGCGG- -5'
6680 5' -63 NC_001847.1 + 2554 0.75 0.160667
Target:  5'- uCUC-CGGCGGGCuGUcuucgGCGCGGGCGCCu -3'
miRNA:   3'- -GAGcGUCGCUCGcCG-----CGCGCUCGCGG- -5'
6680 5' -63 NC_001847.1 + 2586 0.68 0.476901
Target:  5'- -gCGCGGCcgccGCGGCcgcaCGCGAGCccGCCg -3'
miRNA:   3'- gaGCGUCGcu--CGCCGc---GCGCUCG--CGG- -5'
6680 5' -63 NC_001847.1 + 2737 0.66 0.542118
Target:  5'- -aCGgAGCGcagGGCGGgaGCGagcgaGGGCGCCu -3'
miRNA:   3'- gaGCgUCGC---UCGCCg-CGCg----CUCGCGG- -5'
6680 5' -63 NC_001847.1 + 2758 0.72 0.282814
Target:  5'- -gCGCGGCGGcGcCGGCGC-CG-GCGCCc -3'
miRNA:   3'- gaGCGUCGCU-C-GCCGCGcGCuCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.