miRNA display CGI

Results 1 - 20 of 1312 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6680	5'	-63	NC_001847.1	+	48	0.73	0.235466
	Target:  5'- -gCGCGGCGcgugcauuGCGGCGgGCGGGgGCg -3' miRNA:   3'- gaGCGUCGCu-------CGCCGCgCGCUCgCGg -5'
6680	5'	-63	NC_001847.1	+	285	0.69	0.383119
	Target:  5'- -cCGC--CGAGCc-CGCGCGGGCGCCg -3' miRNA:   3'- gaGCGucGCUCGccGCGCGCUCGCGG- -5'
6680	5'	-63	NC_001847.1	+	427	0.68	0.458976
	Target:  5'- --gGCgGGCGGGCGGCG-GCG-GCGgCg -3' miRNA:   3'- gagCG-UCGCUCGCCGCgCGCuCGCgG- -5'
6680	5'	-63	NC_001847.1	+	453	0.69	0.407476
	Target:  5'- --aGCAGCG-GCGGCG-GCG-GCGgCg -3' miRNA:   3'- gagCGUCGCuCGCCGCgCGCuCGCgG- -5'
6680	5'	-63	NC_001847.1	+	483	0.72	0.252393
	Target:  5'- --aGCAGCG-GCGGCG-GCGGggcggccgcGCGCCa -3' miRNA:   3'- gagCGUCGCuCGCCGCgCGCU---------CGCGG- -5'
6680	5'	-63	NC_001847.1	+	545	0.7	0.344732
	Target:  5'- -aCGCGGgGAacgugGCGGCGgaCGCcAGCGCCg -3' miRNA:   3'- gaGCGUCgCU-----CGCCGC--GCGcUCGCGG- -5'
6680	5'	-63	NC_001847.1	+	604	0.78	0.105282
	Target:  5'- -cCGCGGCcgcuccgcAGCGGCGCGCGGcccGCGCCu -3' miRNA:   3'- gaGCGUCGc-------UCGCCGCGCGCU---CGCGG- -5'
6680	5'	-63	NC_001847.1	+	877	0.73	0.230039
	Target:  5'- -gCGCGGCG-GCGGCccGCGCcGGgGCCg -3' miRNA:   3'- gaGCGUCGCuCGCCG--CGCGcUCgCGG- -5'
6680	5'	-63	NC_001847.1	+	996	0.7	0.375218
	Target:  5'- -cCGCGGCG-GCGGCaCGCGcuccaccaGGcCGCCg -3' miRNA:   3'- gaGCGUCGCuCGCCGcGCGC--------UC-GCGG- -5'
6680	5'	-63	NC_001847.1	+	1050	0.68	0.461642
	Target:  5'- gCUCGCcagagcaAGCG-GCGGCGC-CGGGCuguucgcugcuccccGCCu -3' miRNA:   3'- -GAGCG-------UCGCuCGCCGCGcGCUCG---------------CGG- -5'
6680	5'	-63	NC_001847.1	+	1090	0.69	0.415808
	Target:  5'- -aCGCcgGGCGccGCGGC-CGCGggcGGCGCCg -3' miRNA:   3'- gaGCG--UCGCu-CGCCGcGCGC---UCGCGG- -5'
6680	5'	-63	NC_001847.1	+	1141	0.69	0.407476
	Target:  5'- --gGCGGCGccuCGGCGCGCGgcuccggcAGCGCg -3' miRNA:   3'- gagCGUCGCuc-GCCGCGCGC--------UCGCGg -5'
6680	5'	-63	NC_001847.1	+	1193	0.71	0.305114
	Target:  5'- uCUCGCuauAGCuccguGCGcucgguguucuuuuaGCGCGCGGGCGCCc -3' miRNA:   3'- -GAGCG---UCGcu---CGC---------------CGCGCGCUCGCGG- -5'
6680	5'	-63	NC_001847.1	+	1193	0.7	0.375218
	Target:  5'- -cCGCGGCcGGCaGCuCGuCGGGCGCCa -3' miRNA:   3'- gaGCGUCGcUCGcCGcGC-GCUCGCGG- -5'
6680	5'	-63	NC_001847.1	+	1237	0.69	0.427646
	Target:  5'- -cCGCAGgccagguacaccggcCGcAGCGGCGCGCcGAGCcCCc -3' miRNA:   3'- gaGCGUC---------------GC-UCGCCGCGCG-CUCGcGG- -5'
6680	5'	-63	NC_001847.1	+	1410	0.77	0.11643
	Target:  5'- -gCGCGGCGGcacgggcaccGCGGUGCGCGGGC-CCa -3' miRNA:   3'- gaGCGUCGCU----------CGCCGCGCGCUCGcGG- -5'
6680	5'	-63	NC_001847.1	+	1488	0.72	0.282814
	Target:  5'- -cCGCAGCG-GCGGCGCcuCGGGguagaGCCg -3' miRNA:   3'- gaGCGUCGCuCGCCGCGc-GCUCg----CGG- -5'
6680	5'	-63	NC_001847.1	+	1517	0.71	0.295772
	Target:  5'- -gCGCguaGGCGGccuCGGCGCGCGcgaaGGCGCCc -3' miRNA:   3'- gaGCG---UCGCUc--GCCGCGCGC----UCGCGG- -5'
6680	5'	-63	NC_001847.1	+	1563	0.73	0.224191
	Target:  5'- -gCGCcGCGAGgccagcaCGGCGCGCGccagcGCGCCg -3' miRNA:   3'- gaGCGuCGCUC-------GCCGCGCGCu----CGCGG- -5'
6680	5'	-63	NC_001847.1	+	1599	0.7	0.375218
	Target:  5'- gCUCGggcCAGCGcGCGGCGCaCu-GCGCCg -3' miRNA:   3'- -GAGC---GUCGCuCGCCGCGcGcuCGCGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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