miRNA display CGI


Results 1 - 20 of 1312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6680 5' -63 NC_001847.1 + 52613 0.8 0.071825
Target:  5'- --gGCGGCGccuuugacuucGGCGcGUGCGCGAGCGCCg -3'
miRNA:   3'- gagCGUCGC-----------UCGC-CGCGCGCUCGCGG- -5'
6680 5' -63 NC_001847.1 + 32895 0.82 0.055472
Target:  5'- -aCGguGCGcGCcGCGCGCGAGCGCCu -3'
miRNA:   3'- gaGCguCGCuCGcCGCGCGCUCGCGG- -5'
6680 5' -63 NC_001847.1 + 133919 0.82 0.059957
Target:  5'- cCUgGCcuGCGGGCGGCGCGCGcuggagcuGGCGCCc -3'
miRNA:   3'- -GAgCGu-CGCUCGCCGCGCGC--------UCGCGG- -5'
6680 5' -63 NC_001847.1 + 106705 0.81 0.062976
Target:  5'- -gCGCGGCGccGCGGCguagccaGCGCGGGCGCCg -3'
miRNA:   3'- gaGCGUCGCu-CGCCG-------CGCGCUCGCGG- -5'
6680 5' -63 NC_001847.1 + 96341 0.81 0.063139
Target:  5'- --gGCGGCGGGCuGGCGUGCGAcGCGCUg -3'
miRNA:   3'- gagCGUCGCUCG-CCGCGCGCU-CGCGG- -5'
6680 5' -63 NC_001847.1 + 67290 0.81 0.063139
Target:  5'- -gCGCGucGCGAGCGcGCGCGCcAGCGCCg -3'
miRNA:   3'- gaGCGU--CGCUCGC-CGCGCGcUCGCGG- -5'
6680 5' -63 NC_001847.1 + 98834 0.81 0.068221
Target:  5'- cCUCGCGGCGgcgguggcAGCGGCGCGCGAacuucGUGCg -3'
miRNA:   3'- -GAGCGUCGC--------UCGCCGCGCGCU-----CGCGg -5'
6680 5' -63 NC_001847.1 + 55345 0.81 0.068221
Target:  5'- gCUCGCGGCGGuGCugaacGCGcCGCGGGCGCCg -3'
miRNA:   3'- -GAGCGUCGCU-CGc----CGC-GCGCUCGCGG- -5'
6680 5' -63 NC_001847.1 + 8090 0.81 0.068221
Target:  5'- -cCGCGGCGAGauCGGCGaCGCG-GCGCCa -3'
miRNA:   3'- gaGCGUCGCUC--GCCGC-GCGCuCGCGG- -5'
6680 5' -63 NC_001847.1 + 54593 0.82 0.054051
Target:  5'- --gGCGGCGcuGGCGGCGCGCGcccGCGCCg -3'
miRNA:   3'- gagCGUCGC--UCGCCGCGCGCu--CGCGG- -5'
6680 5' -63 NC_001847.1 + 54384 0.82 0.053911
Target:  5'- -cUGCGGCGGGCGGcCGCgggcgagGCGGGCGCCg -3'
miRNA:   3'- gaGCGUCGCUCGCC-GCG-------CGCUCGCGG- -5'
6680 5' -63 NC_001847.1 + 18798 0.83 0.046238
Target:  5'- -cCGCGGCG-GCGGCGCGCGccAGCGCg -3'
miRNA:   3'- gaGCGUCGCuCGCCGCGCGC--UCGCGg -5'
6680 5' -63 NC_001847.1 + 66332 0.9 0.013768
Target:  5'- -cUGCGGCGGGUGGgGCGCGGGCGCCg -3'
miRNA:   3'- gaGCGUCGCUCGCCgCGCGCUCGCGG- -5'
6680 5' -63 NC_001847.1 + 2170 0.89 0.017428
Target:  5'- uCUCGCAGCGcccgcgccgccugGGCGGCGUGCGGGCGCa -3'
miRNA:   3'- -GAGCGUCGC-------------UCGCCGCGCGCUCGCGg -5'
6680 5' -63 NC_001847.1 + 60304 0.86 0.028853
Target:  5'- --gGCGGCGGGCGGCaGCGCGcGCGCCa -3'
miRNA:   3'- gagCGUCGCUCGCCG-CGCGCuCGCGG- -5'
6680 5' -63 NC_001847.1 + 130493 0.86 0.029622
Target:  5'- -aCGCGGCGcgucgGGCugaGGCGCGCGAGCGCCg -3'
miRNA:   3'- gaGCGUCGC-----UCG---CCGCGCGCUCGCGG- -5'
6680 5' -63 NC_001847.1 + 3936 0.85 0.034678
Target:  5'- gCUgGCAGCGGGCGGCgaGCGCGAcccacaGCGCCa -3'
miRNA:   3'- -GAgCGUCGCUCGCCG--CGCGCU------CGCGG- -5'
6680 5' -63 NC_001847.1 + 33495 0.84 0.040579
Target:  5'- -cCGCGGCG-GCGGCGCgggcggcgGCGGGCGCCg -3'
miRNA:   3'- gaGCGUCGCuCGCCGCG--------CGCUCGCGG- -5'
6680 5' -63 NC_001847.1 + 131915 0.83 0.043888
Target:  5'- --aGCAcggcGCGGGCGGCGCGCGAGCGgCu -3'
miRNA:   3'- gagCGU----CGCUCGCCGCGCGCUCGCgG- -5'
6680 5' -63 NC_001847.1 + 104882 0.83 0.045048
Target:  5'- -cCGCAGCG-GUGGCG-GCGAGCGCCc -3'
miRNA:   3'- gaGCGUCGCuCGCCGCgCGCUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.