miRNA display CGI


Results 1 - 20 of 1312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6680 5' -63 NC_001847.1 + 21513 0.66 0.542118
Target:  5'- -gCGCcucGGCGGG-GGcCGCGCGGgccaacGCGCCc -3'
miRNA:   3'- gaGCG---UCGCUCgCC-GCGCGCU------CGCGG- -5'
6680 5' -63 NC_001847.1 + 2737 0.66 0.542118
Target:  5'- -aCGgAGCGcagGGCGGgaGCGagcgaGGGCGCCu -3'
miRNA:   3'- gaGCgUCGC---UCGCCg-CGCg----CUCGCGG- -5'
6680 5' -63 NC_001847.1 + 44193 0.66 0.542118
Target:  5'- -cCGCGGgGAGCGcCGC-CGAGCuagagaGCCa -3'
miRNA:   3'- gaGCGUCgCUCGCcGCGcGCUCG------CGG- -5'
6680 5' -63 NC_001847.1 + 124556 0.66 0.551694
Target:  5'- -gCGcCGGCccGCGcGCGCGgGGGgGCCg -3'
miRNA:   3'- gaGC-GUCGcuCGC-CGCGCgCUCgCGG- -5'
6680 5' -63 NC_001847.1 + 56898 0.66 0.542118
Target:  5'- -gCGaCGGCGAcGcCGGCGgGCGGGUGaCUa -3'
miRNA:   3'- gaGC-GUCGCU-C-GCCGCgCGCUCGC-GG- -5'
6680 5' -63 NC_001847.1 + 129205 0.66 0.542118
Target:  5'- --aGCAGCGGGCgGGCcCGuCGucCGCCg -3'
miRNA:   3'- gagCGUCGCUCG-CCGcGC-GCucGCGG- -5'
6680 5' -63 NC_001847.1 + 20611 0.66 0.542118
Target:  5'- cCUCGCGGCuaaAGaccaaaaaGGCGUuucgcaGCGAGgCGCCa -3'
miRNA:   3'- -GAGCGUCGc--UCg-------CCGCG------CGCUC-GCGG- -5'
6680 5' -63 NC_001847.1 + 124918 0.66 0.542118
Target:  5'- -gCGCGcCGGG-GGCGacaGCGGGCGCg -3'
miRNA:   3'- gaGCGUcGCUCgCCGCg--CGCUCGCGg -5'
6680 5' -63 NC_001847.1 + 11325 0.66 0.551694
Target:  5'- --gGcCGGCGGGCGGCugGCGCcgGAGCGg- -3'
miRNA:   3'- gagC-GUCGCUCGCCG--CGCG--CUCGCgg -5'
6680 5' -63 NC_001847.1 + 28336 0.66 0.551694
Target:  5'- gCUCGcCGGCGGGCaGCGCGgcCGucaucCGCCc -3'
miRNA:   3'- -GAGC-GUCGCUCGcCGCGC--GCuc---GCGG- -5'
6680 5' -63 NC_001847.1 + 105087 0.66 0.542118
Target:  5'- -aCGCGGCGgaagccgccgucGGCGGCGgggcCGCcGGGCGgCa -3'
miRNA:   3'- gaGCGUCGC------------UCGCCGC----GCG-CUCGCgG- -5'
6680 5' -63 NC_001847.1 + 111427 0.66 0.542118
Target:  5'- gCUCgGCcGgGGGCGGgGgGagGAGCGCCc -3'
miRNA:   3'- -GAG-CGuCgCUCGCCgCgCg-CUCGCGG- -5'
6680 5' -63 NC_001847.1 + 13473 0.66 0.551694
Target:  5'- gCUCGggccgcaccccaCAGCG-GCGGCcuucCGCGAagugcGCGCCa -3'
miRNA:   3'- -GAGC------------GUCGCuCGCCGc---GCGCU-----CGCGG- -5'
6680 5' -63 NC_001847.1 + 25193 0.66 0.551694
Target:  5'- gCUgGcCAGCGAGCcccGCGCGCGGcCGgCa -3'
miRNA:   3'- -GAgC-GUCGCUCGc--CGCGCGCUcGCgG- -5'
6680 5' -63 NC_001847.1 + 131437 0.66 0.542118
Target:  5'- -aCGCGGCGGccgcggggcccGCGGC-CGUGuucGUGCCg -3'
miRNA:   3'- gaGCGUCGCU-----------CGCCGcGCGCu--CGCGG- -5'
6680 5' -63 NC_001847.1 + 30944 0.66 0.551694
Target:  5'- uUCGCAuaaaCGGcGCuGCGCGCGcGGUGCCc -3'
miRNA:   3'- gAGCGUc---GCU-CGcCGCGCGC-UCGCGG- -5'
6680 5' -63 NC_001847.1 + 31739 0.66 0.542118
Target:  5'- --aGCccuauGuCGAGCGGCGCGUGgucAGCGUg -3'
miRNA:   3'- gagCGu----C-GCUCGCCGCGCGC---UCGCGg -5'
6680 5' -63 NC_001847.1 + 58755 0.66 0.551694
Target:  5'- --aGCGGCG-GCGGC-CGCGAcgGuCGCUg -3'
miRNA:   3'- gagCGUCGCuCGCCGcGCGCU--C-GCGG- -5'
6680 5' -63 NC_001847.1 + 133417 0.66 0.542118
Target:  5'- -gCGCGGCuGGccGCGGCGCGgCG-GCGgCu -3'
miRNA:   3'- gaGCGUCG-CU--CGCCGCGC-GCuCGCgG- -5'
6680 5' -63 NC_001847.1 + 35622 0.66 0.542118
Target:  5'- -cCGCcGCcGGCGGCGCugggGCcAGCGCUg -3'
miRNA:   3'- gaGCGuCGcUCGCCGCG----CGcUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.