miRNA display CGI

Results 1 - 20 of 1312 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6680	5'	-63	NC_001847.1	+	120500	1.11	0.000443
	Target:  5'- gCUCGCAGCGAGCGGCGCGCGAGCGCCg -3' miRNA:   3'- -GAGCGUCGCUCGCCGCGCGCUCGCGG- -5'
6680	5'	-63	NC_001847.1	+	66332	0.9	0.013768
	Target:  5'- -cUGCGGCGGGUGGgGCGCGGGCGCCg -3' miRNA:   3'- gaGCGUCGCUCGCCgCGCGCUCGCGG- -5'
6680	5'	-63	NC_001847.1	+	2170	0.89	0.017428
	Target:  5'- uCUCGCAGCGcccgcgccgccugGGCGGCGUGCGGGCGCa -3' miRNA:   3'- -GAGCGUCGC-------------UCGCCGCGCGCUCGCGg -5'
6680	5'	-63	NC_001847.1	+	42725	0.88	0.022168
	Target:  5'- -gCGCGGCGGGCGGcCGCGCGGGCGgCg -3' miRNA:   3'- gaGCGUCGCUCGCC-GCGCGCUCGCgG- -5'
6680	5'	-63	NC_001847.1	+	60304	0.86	0.028853
	Target:  5'- --gGCGGCGGGCGGCaGCGCGcGCGCCa -3' miRNA:   3'- gagCGUCGCUCGCCG-CGCGCuCGCGG- -5'
6680	5'	-63	NC_001847.1	+	130493	0.86	0.029622
	Target:  5'- -aCGCGGCGcgucgGGCugaGGCGCGCGAGCGCCg -3' miRNA:   3'- gaGCGUCGC-----UCG---CCGCGCGCUCGCGG- -5'
6680	5'	-63	NC_001847.1	+	27680	0.86	0.029622
	Target:  5'- -aCGCGGCGcgucgGGCugaGGCGCGCGAGCGCCg -3' miRNA:   3'- gaGCGUCGC-----UCG---CCGCGCGCUCGCGG- -5'
6680	5'	-63	NC_001847.1	+	3936	0.85	0.034678
	Target:  5'- gCUgGCAGCGGGCGGCgaGCGCGAcccacaGCGCCa -3' miRNA:   3'- -GAgCGUCGCUCGCCG--CGCGCU------CGCGG- -5'
6680	5'	-63	NC_001847.1	+	33495	0.84	0.040579
	Target:  5'- -cCGCGGCG-GCGGCGCgggcggcgGCGGGCGCCg -3' miRNA:   3'- gaGCGUCGCuCGCCGCG--------CGCUCGCGG- -5'
6680	5'	-63	NC_001847.1	+	131915	0.83	0.043888
	Target:  5'- --aGCAcggcGCGGGCGGCGCGCGAGCGgCu -3' miRNA:   3'- gagCGU----CGCUCGCCGCGCGCUCGCgG- -5'
6680	5'	-63	NC_001847.1	+	29102	0.83	0.043888
	Target:  5'- --aGCAcggcGCGGGCGGCGCGCGAGCGgCu -3' miRNA:   3'- gagCGU----CGCUCGCCGCGCGCUCGCgG- -5'
6680	5'	-63	NC_001847.1	+	104882	0.83	0.045048
	Target:  5'- -cCGCAGCG-GUGGCG-GCGAGCGCCc -3' miRNA:   3'- gaGCGUCGCuCGCCGCgCGCUCGCGG- -5'
6680	5'	-63	NC_001847.1	+	2069	0.83	0.045048
	Target:  5'- -cCGCAGCG-GUGGCG-GCGAGCGCCc -3' miRNA:   3'- gaGCGUCGCuCGCCGCgCGCUCGCGG- -5'
6680	5'	-63	NC_001847.1	+	18798	0.83	0.046238
	Target:  5'- -cCGCGGCG-GCGGCGCGCGccAGCGCg -3' miRNA:   3'- gaGCGUCGCuCGCCGCGCGC--UCGCGg -5'
6680	5'	-63	NC_001847.1	+	134194	0.83	0.047459
	Target:  5'- -gCGCAGCgugGAGCGGCGCGCGcGgGCCg -3' miRNA:   3'- gaGCGUCG---CUCGCCGCGCGCuCgCGG- -5'
6680	5'	-63	NC_001847.1	+	66268	0.83	0.049866
	Target:  5'- gCUCGCGGCGAcucccggGCGGCGCGaguaGGCGCCg -3' miRNA:   3'- -GAGCGUCGCU-------CGCCGCGCgc--UCGCGG- -5'
6680	5'	-63	NC_001847.1	+	58239	0.83	0.051314
	Target:  5'- --gGCAGCG-GCGGCGCGCGAcCGCCc -3' miRNA:   3'- gagCGUCGCuCGCCGCGCGCUcGCGG- -5'
6680	5'	-63	NC_001847.1	+	54384	0.82	0.053911
	Target:  5'- -cUGCGGCGGGCGGcCGCgggcgagGCGGGCGCCg -3' miRNA:   3'- gaGCGUCGCUCGCC-GCG-------CGCUCGCGG- -5'
6680	5'	-63	NC_001847.1	+	54593	0.82	0.054051
	Target:  5'- --gGCGGCGcuGGCGGCGCGCGcccGCGCCg -3' miRNA:   3'- gagCGUCGC--UCGCCGCGCGCu--CGCGG- -5'
6680	5'	-63	NC_001847.1	+	20899	0.82	0.055472
	Target:  5'- --gGCAGCGAGCGcgucGCGgGCGAGCGCUa -3' miRNA:   3'- gagCGUCGCUCGC----CGCgCGCUCGCGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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