miRNA display CGI

Results 1 - 20 of 1312 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6680	5'	-63	NC_001847.1	+	103373	0.66	0.600227
	Target:  5'- -cCGUguuGGCcGGC-GCGCGCGGGUGCa -3' miRNA:   3'- gaGCG---UCGcUCGcCGCGCGCUCGCGg -5'
6680	5'	-63	NC_001847.1	+	79374	0.66	0.594359
	Target:  5'- -cCGCc-CGAGCccguacucagggcacGGcCGCGCGGGCGCg -3' miRNA:   3'- gaGCGucGCUCG---------------CC-GCGCGCUCGCGg -5'
6680	5'	-63	NC_001847.1	+	94614	0.66	0.590452
	Target:  5'- -cCGCAGCacgucGCGcGuCGCGCGcAGcCGCCg -3' miRNA:   3'- gaGCGUCGcu---CGC-C-GCGCGC-UC-GCGG- -5'
6680	5'	-63	NC_001847.1	+	42725	0.88	0.022168
	Target:  5'- -gCGCGGCGGGCGGcCGCGCGGGCGgCg -3' miRNA:   3'- gaGCGUCGCUCGCC-GCGCGCUCGCgG- -5'
6680	5'	-63	NC_001847.1	+	89316	0.66	0.600227
	Target:  5'- -cCGCccAGCGAGUGGC-C-CGGGCGgCa -3' miRNA:   3'- gaGCG--UCGCUCGCCGcGcGCUCGCgG- -5'
6680	5'	-63	NC_001847.1	+	74438	0.66	0.600227
	Target:  5'- gUCGUGGCGGcgcacgacgccGUGGCGCugcaguacgaGCGGGgGCUg -3' miRNA:   3'- gAGCGUCGCU-----------CGCCGCG----------CGCUCgCGG- -5'
6680	5'	-63	NC_001847.1	+	50536	0.66	0.600227
	Target:  5'- gCUCGaaGGCGAcgcaGCGGCGCugcuggaccGCG-GCGUCg -3' miRNA:   3'- -GAGCg-UCGCU----CGCCGCG---------CGCuCGCGG- -5'
6680	5'	-63	NC_001847.1	+	41848	0.66	0.600227
	Target:  5'- -aCGC-GCGcGCGGCcuGCGCGc-CGCCg -3' miRNA:   3'- gaGCGuCGCuCGCCG--CGCGCucGCGG- -5'
6680	5'	-63	NC_001847.1	+	11561	0.66	0.600227
	Target:  5'- -gCGCccAGCGGguGCGGCuGcCGCG-GUGCCg -3' miRNA:   3'- gaGCG--UCGCU--CGCCG-C-GCGCuCGCGG- -5'
6680	5'	-63	NC_001847.1	+	66815	0.66	0.599248
	Target:  5'- -aCGC--CGAGCGGCGCGUucugcaccuguuuGAcGUGCCc -3' miRNA:   3'- gaGCGucGCUCGCCGCGCG-------------CU-CGCGG- -5'
6680	5'	-63	NC_001847.1	+	30401	0.66	0.600227
	Target:  5'- --gGCGGCccGAGUGGC-CGCc-GCGCCg -3' miRNA:   3'- gagCGUCG--CUCGCCGcGCGcuCGCGG- -5'
6680	5'	-63	NC_001847.1	+	35415	0.66	0.600227
	Target:  5'- -aCGCAcccGCGcAGCGGCuuGCGCaucGCGCUg -3' miRNA:   3'- gaGCGU---CGC-UCGCCG--CGCGcu-CGCGG- -5'
6680	5'	-63	NC_001847.1	+	131955	0.66	0.600227
	Target:  5'- aUgGCGGCGA-CGGCG-GCGAGaGCg -3' miRNA:   3'- gAgCGUCGCUcGCCGCgCGCUCgCGg -5'
6680	5'	-63	NC_001847.1	+	126045	0.66	0.599248
	Target:  5'- -cUGCGGUggcuccgaGAGCGGCaccccgcGCGCGuAGCaGCCu -3' miRNA:   3'- gaGCGUCG--------CUCGCCG-------CGCGC-UCG-CGG- -5'
6680	5'	-63	NC_001847.1	+	57949	0.66	0.600227
	Target:  5'- -cCGUcGCGGGCaGCaGCGCGgucgcGGCGUCg -3' miRNA:   3'- gaGCGuCGCUCGcCG-CGCGC-----UCGCGG- -5'
6680	5'	-63	NC_001847.1	+	38604	0.66	0.600227
	Target:  5'- -gCGCGGCugcacAGcCGGCGCGCGcGGUccguuGCCg -3' miRNA:   3'- gaGCGUCGc----UC-GCCGCGCGC-UCG-----CGG- -5'
6680	5'	-63	NC_001847.1	+	120985	0.66	0.599248
	Target:  5'- -gCGCGGCcgucgcccuAGCGGCcgcccagGCGCGGGCcCCg -3' miRNA:   3'- gaGCGUCGc--------UCGCCG-------CGCGCUCGcGG- -5'
6680	5'	-63	NC_001847.1	+	35957	0.66	0.594359
	Target:  5'- -gCGCuGCuGGCGGCGCuGCuGuggcucccgccggcuGGCGCCa -3' miRNA:   3'- gaGCGuCGcUCGCCGCG-CG-C---------------UCGCGG- -5'
6680	5'	-63	NC_001847.1	+	105610	0.66	0.600227
	Target:  5'- aCUCG-AGCGcccGCGcCGCGCGGGCGa- -3' miRNA:   3'- -GAGCgUCGCu--CGCcGCGCGCUCGCgg -5'
6680	5'	-63	NC_001847.1	+	73935	0.66	0.600227
	Target:  5'- -gCGCAGCcGGCGcGUaccugGCGCGcGCGCa -3' miRNA:   3'- gaGCGUCGcUCGC-CG-----CGCGCuCGCGg -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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