miRNA display CGI


Results 1 - 20 of 1312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6680 5' -63 NC_001847.1 + 135133 0.7 0.352184
Target:  5'- gUCGCAGgGGGCc-CGCGCG-GCGCg -3'
miRNA:   3'- gAGCGUCgCUCGccGCGCGCuCGCGg -5'
6680 5' -63 NC_001847.1 + 135024 0.74 0.199661
Target:  5'- -cCGCgGGCGGGgcCGGgGCGCGGGgCGCCg -3'
miRNA:   3'- gaGCG-UCGCUC--GCCgCGCGCUC-GCGG- -5'
6680 5' -63 NC_001847.1 + 134833 0.68 0.458976
Target:  5'- -gCGCgaAGCuccGGCGGgGCGCGgggacGGCGCCc -3'
miRNA:   3'- gaGCG--UCGc--UCGCCgCGCGC-----UCGCGG- -5'
6680 5' -63 NC_001847.1 + 134769 0.74 0.209379
Target:  5'- gUC-CGGCGcGCGGCGCGCGGGgcggGCCc -3'
miRNA:   3'- gAGcGUCGCuCGCCGCGCGCUCg---CGG- -5'
6680 5' -63 NC_001847.1 + 134639 0.67 0.532597
Target:  5'- gCUgGgGGCGGGcCGGCagcagGCGCGgaGGCGCg -3'
miRNA:   3'- -GAgCgUCGCUC-GCCG-----CGCGC--UCGCGg -5'
6680 5' -63 NC_001847.1 + 134638 0.68 0.467895
Target:  5'- -cCGCGGacaGGGggguUGGCGCGCGGcCGCCc -3'
miRNA:   3'- gaGCGUCg--CUC----GCCGCGCGCUcGCGG- -5'
6680 5' -63 NC_001847.1 + 134545 0.72 0.282814
Target:  5'- -cCGCuGCgGAGCGGC-CGCGgAGgGCCa -3'
miRNA:   3'- gaGCGuCG-CUCGCCGcGCGC-UCgCGG- -5'
6680 5' -63 NC_001847.1 + 134513 0.67 0.485993
Target:  5'- cCUCgGgGGCGGGgGGagGCGCGGGcCGCg -3'
miRNA:   3'- -GAG-CgUCGCUCgCCg-CGCGCUC-GCGg -5'
6680 5' -63 NC_001847.1 + 134244 0.73 0.234918
Target:  5'- --gGCGGCGgccGGCGGCcgcggcggccccgGCGCGGGcCGCCg -3'
miRNA:   3'- gagCGUCGC---UCGCCG-------------CGCGCUC-GCGG- -5'
6680 5' -63 NC_001847.1 + 134194 0.83 0.047459
Target:  5'- -gCGCAGCgugGAGCGGCGCGCGcGgGCCg -3'
miRNA:   3'- gaGCGUCG---CUCGCCGCGCGCuCgCGG- -5'
6680 5' -63 NC_001847.1 + 134128 0.73 0.235466
Target:  5'- -gCGCcGCGGGCGGCggccugguggaGCGCGuGcCGCCg -3'
miRNA:   3'- gaGCGuCGCUCGCCG-----------CGCGCuC-GCGG- -5'
6680 5' -63 NC_001847.1 + 134041 0.73 0.230039
Target:  5'- -cCGCGGCGGcgccgcccGCGGC-CGCG-GCGCCc -3'
miRNA:   3'- gaGCGUCGCU--------CGCCGcGCGCuCGCGG- -5'
6680 5' -63 NC_001847.1 + 134028 0.66 0.542118
Target:  5'- uCUCGcCAGCGucgcAGgGGCaCGCG-GCGUCu -3'
miRNA:   3'- -GAGC-GUCGC----UCgCCGcGCGCuCGCGG- -5'
6680 5' -63 NC_001847.1 + 133987 0.71 0.309187
Target:  5'- -gCGCGGCcgcgcugccgGAGCcGCGCGcCGAGgCGCCg -3'
miRNA:   3'- gaGCGUCG----------CUCGcCGCGC-GCUC-GCGG- -5'
6680 5' -63 NC_001847.1 + 133919 0.82 0.059957
Target:  5'- cCUgGCcuGCGGGCGGCGCGCGcuggagcuGGCGCCc -3'
miRNA:   3'- -GAgCGu-CGCUCGCCGCGCGC--------UCGCGG- -5'
6680 5' -63 NC_001847.1 + 133752 0.68 0.43278
Target:  5'- -cCGC-GCGAGUaccGGCaGCGCGuGCuGCCg -3'
miRNA:   3'- gaGCGuCGCUCG---CCG-CGCGCuCG-CGG- -5'
6680 5' -63 NC_001847.1 + 133595 0.73 0.240442
Target:  5'- cCUCGCGGCGcgucuucGGCccgGGCGCcuucGCGcGCGCCg -3'
miRNA:   3'- -GAGCGUCGC-------UCG---CCGCG----CGCuCGCGG- -5'
6680 5' -63 NC_001847.1 + 133556 0.76 0.156785
Target:  5'- -gCGCuGGCccGAGCGGCGCGCuGGCGCg -3'
miRNA:   3'- gaGCG-UCG--CUCGCCGCGCGcUCGCGg -5'
6680 5' -63 NC_001847.1 + 133526 0.68 0.467895
Target:  5'- -cCGCGGUGcugccGCGGCGCa-GuGCGCCg -3'
miRNA:   3'- gaGCGUCGCu----CGCCGCGcgCuCGCGG- -5'
6680 5' -63 NC_001847.1 + 133417 0.66 0.542118
Target:  5'- -gCGCGGCuGGccGCGGCGCGgCG-GCGgCu -3'
miRNA:   3'- gaGCGUCG-CU--CGCCGCGC-GCuCGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.