miRNA display CGI

Results 21 - 40 of 1312 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6680	5'	-63	NC_001847.1	+	57949	0.66	0.600227
	Target:  5'- -cCGUcGCGGGCaGCaGCGCGgucgcGGCGUCg -3' miRNA:   3'- gaGCGuCGCUCGcCG-CGCGC-----UCGCGG- -5'
6680	5'	-63	NC_001847.1	+	5809	0.66	0.600227
	Target:  5'- -gCGCuuGCGcuUGGCGCGCcGGGUGCg -3' miRNA:   3'- gaGCGu-CGCucGCCGCGCG-CUCGCGg -5'
6680	5'	-63	NC_001847.1	+	89316	0.66	0.600227
	Target:  5'- -cCGCccAGCGAGUGGC-C-CGGGCGgCa -3' miRNA:   3'- gaGCG--UCGCUCGCCGcGcGCUCGCgG- -5'
6680	5'	-63	NC_001847.1	+	76474	0.66	0.600227
	Target:  5'- -gCGCuuccacGGC-AGCGGCGCcUGcAGCGCCu -3' miRNA:   3'- gaGCG------UCGcUCGCCGCGcGC-UCGCGG- -5'
6680	5'	-63	NC_001847.1	+	35415	0.66	0.600227
	Target:  5'- -aCGCAcccGCGcAGCGGCuuGCGCaucGCGCUg -3' miRNA:   3'- gaGCGU---CGC-UCGCCG--CGCGcu-CGCGG- -5'
6680	5'	-63	NC_001847.1	+	63858	0.66	0.600227
	Target:  5'- -gCGCGGgGGGCGcaUGCGCGAcggcugggacGCGCUg -3' miRNA:   3'- gaGCGUCgCUCGCc-GCGCGCU----------CGCGG- -5'
6680	5'	-63	NC_001847.1	+	22804	0.66	0.600227
	Target:  5'- gCUCGUAgauGCGGGcCGGCG-GCGGcCGCUc -3' miRNA:   3'- -GAGCGU---CGCUC-GCCGCgCGCUcGCGG- -5'
6680	5'	-63	NC_001847.1	+	34052	0.66	0.599248
	Target:  5'- -cCGCGGCgcgcgcguuuuucGAGgGGCaCGCGgAGCGCg -3' miRNA:   3'- gaGCGUCG-------------CUCgCCGcGCGC-UCGCGg -5'
6680	5'	-63	NC_001847.1	+	74683	0.66	0.599248
	Target:  5'- -cCGCGGCaggacGGCGGCcgGCGCuuuugccuguacgGGGCGCUg -3' miRNA:   3'- gaGCGUCGc----UCGCCG--CGCG-------------CUCGCGG- -5'
6680	5'	-63	NC_001847.1	+	126045	0.66	0.599248
	Target:  5'- -cUGCGGUggcuccgaGAGCGGCaccccgcGCGCGuAGCaGCCu -3' miRNA:   3'- gaGCGUCG--------CUCGCCG-------CGCGC-UCG-CGG- -5'
6680	5'	-63	NC_001847.1	+	120985	0.66	0.599248
	Target:  5'- -gCGCGGCcgucgcccuAGCGGCcgcccagGCGCGGGCcCCg -3' miRNA:   3'- gaGCGUCGc--------UCGCCG-------CGCGCUCGcGG- -5'
6680	5'	-63	NC_001847.1	+	84850	0.66	0.599248
	Target:  5'- -cCGCAGCuGGUGGaaguaguCGUGCGAGgCGaCCg -3' miRNA:   3'- gaGCGUCGcUCGCC-------GCGCGCUC-GC-GG- -5'
6680	5'	-63	NC_001847.1	+	66815	0.66	0.599248
	Target:  5'- -aCGC--CGAGCGGCGCGUucugcaccuguuuGAcGUGCCc -3' miRNA:   3'- gaGCGucGCUCGCCGCGCG-------------CU-CGCGG- -5'
6680	5'	-63	NC_001847.1	+	74017	0.66	0.597292
	Target:  5'- -aCGCuGCGc-CGGCGCGUGccgcuggcggacguGGCGCUg -3' miRNA:   3'- gaGCGuCGCucGCCGCGCGC--------------UCGCGG- -5'
6680	5'	-63	NC_001847.1	+	11474	0.66	0.597292
	Target:  5'- -gCGUGGCGAGCcccgccacacaucuGGCucagGCGCcuucagccaaGGGCGCCg -3' miRNA:   3'- gaGCGUCGCUCG--------------CCG----CGCG----------CUCGCGG- -5'
6680	5'	-63	NC_001847.1	+	86535	0.66	0.594359
	Target:  5'- -cCGCGuGCuGGCGGCGCGgcuuaagggggacgcCGAggacgGCGCCg -3' miRNA:   3'- gaGCGU-CGcUCGCCGCGC---------------GCU-----CGCGG- -5'
6680	5'	-63	NC_001847.1	+	79374	0.66	0.594359
	Target:  5'- -cCGCc-CGAGCccguacucagggcacGGcCGCGCGGGCGCg -3' miRNA:   3'- gaGCGucGCUCG---------------CC-GCGCGCUCGCGg -5'
6680	5'	-63	NC_001847.1	+	84353	0.66	0.594359
	Target:  5'- -cCGCAGCgccgcgagguguauuGAGCGGC-CGCGGaccGCGgCa -3' miRNA:   3'- gaGCGUCG---------------CUCGCCGcGCGCU---CGCgG- -5'
6680	5'	-63	NC_001847.1	+	35957	0.66	0.594359
	Target:  5'- -gCGCuGCuGGCGGCGCuGCuGuggcucccgccggcuGGCGCCa -3' miRNA:   3'- gaGCGuCGcUCGCCGCG-CG-C---------------UCGCGG- -5'
6680	5'	-63	NC_001847.1	+	69542	0.66	0.590452
	Target:  5'- uUCGCGcccCGGGCguGGaUGCGCGuGUGCCu -3' miRNA:   3'- gAGCGUc--GCUCG--CC-GCGCGCuCGCGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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