miRNA display CGI


Results 41 - 60 of 1312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6680 5' -63 NC_001847.1 + 43433 0.66 0.590452
Target:  5'- cCUCGCGuCGcGCGGUGCccgagagcgaaGCGGGaGCCg -3'
miRNA:   3'- -GAGCGUcGCuCGCCGCG-----------CGCUCgCGG- -5'
6680 5' -63 NC_001847.1 + 48817 0.66 0.590452
Target:  5'- aUCGgGGaugucCGGGCcuugccGCGCGgGGGCGCCu -3'
miRNA:   3'- gAGCgUC-----GCUCGc-----CGCGCgCUCGCGG- -5'
6680 5' -63 NC_001847.1 + 69542 0.66 0.590452
Target:  5'- uUCGCGcccCGGGCguGGaUGCGCGuGUGCCu -3'
miRNA:   3'- gAGCGUc--GCUCG--CC-GCGCGCuCGCGG- -5'
6680 5' -63 NC_001847.1 + 59755 0.66 0.590452
Target:  5'- cCUCGCGGCG-GCGaCGCGagacGGUGUCc -3'
miRNA:   3'- -GAGCGUCGCuCGCcGCGCgc--UCGCGG- -5'
6680 5' -63 NC_001847.1 + 57620 0.66 0.590452
Target:  5'- cCUCGC-GCucGCaGGCacGCGCGAGCuccccgGCCa -3'
miRNA:   3'- -GAGCGuCGcuCG-CCG--CGCGCUCG------CGG- -5'
6680 5' -63 NC_001847.1 + 54330 0.66 0.590452
Target:  5'- gUCGCGGCGcGCGGCcuuCGC---CGCCg -3'
miRNA:   3'- gAGCGUCGCuCGCCGc--GCGcucGCGG- -5'
6680 5' -63 NC_001847.1 + 85142 0.66 0.590452
Target:  5'- --aGCAgGCG-GUgGGCGCGCGGGCuCCn -3'
miRNA:   3'- gagCGU-CGCuCG-CCGCGCGCUCGcGG- -5'
6680 5' -63 NC_001847.1 + 85171 0.66 0.590452
Target:  5'- cCUCGUGGCucucgucgaaGGCuaGGUGCGCGGcaccgcGCGCCa -3'
miRNA:   3'- -GAGCGUCGc---------UCG--CCGCGCGCU------CGCGG- -5'
6680 5' -63 NC_001847.1 + 7730 0.66 0.590452
Target:  5'- -gCGCAGgGcGCGG-GCGCGgaGGCGgCg -3'
miRNA:   3'- gaGCGUCgCuCGCCgCGCGC--UCGCgG- -5'
6680 5' -63 NC_001847.1 + 88552 0.66 0.590452
Target:  5'- -gCGUGGCGugaccGCGcucGCGCGCG-GCGCg -3'
miRNA:   3'- gaGCGUCGCu----CGC---CGCGCGCuCGCGg -5'
6680 5' -63 NC_001847.1 + 54115 0.66 0.590452
Target:  5'- -cCGCAGUccgcGGCGGCGuCGCccauGCGCUc -3'
miRNA:   3'- gaGCGUCGc---UCGCCGC-GCGcu--CGCGG- -5'
6680 5' -63 NC_001847.1 + 91772 0.66 0.590452
Target:  5'- aUCGCAGCGAGCuc--CGCGAGguaCGUCu -3'
miRNA:   3'- gAGCGUCGCUCGccgcGCGCUC---GCGG- -5'
6680 5' -63 NC_001847.1 + 102120 0.66 0.590452
Target:  5'- gCUCgGCGGagaGGGCGGCggcacuccGCGCGAccacggcgGCGCg -3'
miRNA:   3'- -GAG-CGUCg--CUCGCCG--------CGCGCU--------CGCGg -5'
6680 5' -63 NC_001847.1 + 45235 0.66 0.588501
Target:  5'- -aCGCAGCGuuugacgacuuuGCGccGCcgGCGUGAGCGCg -3'
miRNA:   3'- gaGCGUCGCu-----------CGC--CG--CGCGCUCGCGg -5'
6680 5' -63 NC_001847.1 + 28495 0.66 0.580706
Target:  5'- -cCGCGGCGccgccgcuAGC-GCGCGCGcuuuuugccguGGCGCUu -3'
miRNA:   3'- gaGCGUCGC--------UCGcCGCGCGC-----------UCGCGG- -5'
6680 5' -63 NC_001847.1 + 101381 0.66 0.580706
Target:  5'- -nCGCGG-GGGCuGCcCGCG-GCGCCg -3'
miRNA:   3'- gaGCGUCgCUCGcCGcGCGCuCGCGG- -5'
6680 5' -63 NC_001847.1 + 127983 0.66 0.580706
Target:  5'- -cCGCccgGGCGAGCGaGCGCGaca-CGCCc -3'
miRNA:   3'- gaGCG---UCGCUCGC-CGCGCgcucGCGG- -5'
6680 5' -63 NC_001847.1 + 35737 0.66 0.580706
Target:  5'- -cCGCGGUgGAGUGGCuGCaGCaAGCGCg -3'
miRNA:   3'- gaGCGUCG-CUCGCCG-CG-CGcUCGCGg -5'
6680 5' -63 NC_001847.1 + 36036 0.66 0.580706
Target:  5'- -gCGCGGaCGAGCacuaCGCGCG-GCuGCCg -3'
miRNA:   3'- gaGCGUC-GCUCGcc--GCGCGCuCG-CGG- -5'
6680 5' -63 NC_001847.1 + 100818 0.66 0.580706
Target:  5'- aUUGCGGCcgaccucggcccGGGCGGCuccggccaGgGCcgGAGCGCCg -3'
miRNA:   3'- gAGCGUCG------------CUCGCCG--------CgCG--CUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.