miRNA display CGI


Results 41 - 60 of 1312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6680 5' -63 NC_001847.1 + 2836 0.71 0.295772
Target:  5'- -cCGcCGGCGGGCugaacaGCGCGCGcgccAGCGCCc -3'
miRNA:   3'- gaGC-GUCGCUCGc-----CGCGCGC----UCGCGG- -5'
6680 5' -63 NC_001847.1 + 2909 0.68 0.43278
Target:  5'- -cCGC-GCGAGCGGgGCcaCGGuccGCGCCg -3'
miRNA:   3'- gaGCGuCGCUCGCCgCGc-GCU---CGCGG- -5'
6680 5' -63 NC_001847.1 + 2956 0.77 0.125504
Target:  5'- -gCGCGGCGGccgccuCGGCGCGC-AGCGCCg -3'
miRNA:   3'- gaGCGUCGCUc-----GCCGCGCGcUCGCGG- -5'
6680 5' -63 NC_001847.1 + 3075 0.69 0.424243
Target:  5'- gCUCGUAGUGcAGCaGCGCGaUGA-CGCCc -3'
miRNA:   3'- -GAGCGUCGC-UCGcCGCGC-GCUcGCGG- -5'
6680 5' -63 NC_001847.1 + 3148 0.79 0.095143
Target:  5'- --gGCGGCGccGGCGGCGCgGCGGGcCGCCu -3'
miRNA:   3'- gagCGUCGC--UCGCCGCG-CGCUC-GCGG- -5'
6680 5' -63 NC_001847.1 + 3183 0.71 0.316066
Target:  5'- cCUCGCGGCaGGCgacGGCGCaGCGGucCGCCa -3'
miRNA:   3'- -GAGCGUCGcUCG---CCGCG-CGCUc-GCGG- -5'
6680 5' -63 NC_001847.1 + 3250 0.75 0.181401
Target:  5'- gCUCGcCGGCG-GCaGGgGCGCcGGCGCCg -3'
miRNA:   3'- -GAGC-GUCGCuCG-CCgCGCGcUCGCGG- -5'
6680 5' -63 NC_001847.1 + 3298 0.78 0.100091
Target:  5'- -gCGCagcucGGCGAGCGcG-GCGCGGGCGCCg -3'
miRNA:   3'- gaGCG-----UCGCUCGC-CgCGCGCUCGCGG- -5'
6680 5' -63 NC_001847.1 + 3406 0.68 0.450149
Target:  5'- gUCGCAGuCGuAGCGGCGgcucauggccaCGCaGGcCGCCa -3'
miRNA:   3'- gAGCGUC-GC-UCGCCGC-----------GCGcUC-GCGG- -5'
6680 5' -63 NC_001847.1 + 3407 0.68 0.476901
Target:  5'- --aGCAGCgggaGAGCaGCcCGgGGGCGCCa -3'
miRNA:   3'- gagCGUCG----CUCGcCGcGCgCUCGCGG- -5'
6680 5' -63 NC_001847.1 + 3463 0.7 0.352184
Target:  5'- gUCGaCAGCaAGCGcGCGC-CGGcGCGCCg -3'
miRNA:   3'- gAGC-GUCGcUCGC-CGCGcGCU-CGCGG- -5'
6680 5' -63 NC_001847.1 + 3552 0.69 0.415808
Target:  5'- -gCGCGGCG-GCGGCGUaguugaggGUGuAGcCGCCg -3'
miRNA:   3'- gaGCGUCGCuCGCCGCG--------CGC-UC-GCGG- -5'
6680 5' -63 NC_001847.1 + 3622 0.73 0.248929
Target:  5'- --gGCcauGGCGucGCGGCGCGCGuacaccagguccaccAGCGCCg -3'
miRNA:   3'- gagCG---UCGCu-CGCCGCGCGC---------------UCGCGG- -5'
6680 5' -63 NC_001847.1 + 3717 0.67 0.504418
Target:  5'- -cCGCGGCcgccGCGuaGCGCGCGGcCGCCu -3'
miRNA:   3'- gaGCGUCGcu--CGC--CGCGCGCUcGCGG- -5'
6680 5' -63 NC_001847.1 + 3806 0.76 0.135229
Target:  5'- -aCGCGGcCGGGCGGCG-GCGGcGCGCUg -3'
miRNA:   3'- gaGCGUC-GCUCGCCGCgCGCU-CGCGG- -5'
6680 5' -63 NC_001847.1 + 3816 0.66 0.570994
Target:  5'- -aCGgGGCGu-CGGC-CGCGAGCGUg -3'
miRNA:   3'- gaGCgUCGCucGCCGcGCGCUCGCGg -5'
6680 5' -63 NC_001847.1 + 3892 0.81 0.062976
Target:  5'- -gCGCGGCGccGCGGCguagccaGCGCGGGCGCCg -3'
miRNA:   3'- gaGCGUCGCu-CGCCG-------CGCGCUCGCGG- -5'
6680 5' -63 NC_001847.1 + 3892 0.72 0.282814
Target:  5'- -gCGgAGCGAGCcguuGCGCGCGguGGCGCg -3'
miRNA:   3'- gaGCgUCGCUCGc---CGCGCGC--UCGCGg -5'
6680 5' -63 NC_001847.1 + 3936 0.85 0.034678
Target:  5'- gCUgGCAGCGGGCGGCgaGCGCGAcccacaGCGCCa -3'
miRNA:   3'- -GAgCGUCGCUCGCCG--CGCGCU------CGCGG- -5'
6680 5' -63 NC_001847.1 + 3946 0.78 0.111844
Target:  5'- -cCGCGGCGGGgGGgGCGCcgucuccggcggcgaGGGCGCCg -3'
miRNA:   3'- gaGCGUCGCUCgCCgCGCG---------------CUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.