miRNA display CGI


Results 41 - 60 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6681 3' -56.6 NC_001847.1 + 54767 0.66 0.872007
Target:  5'- cGUGGCGGUGcAUaauggguuuUGCGCacGCcGCGCCu -3'
miRNA:   3'- -CGCUGCCAUuUG---------ACGCG--CGaCGCGGc -5'
6681 3' -56.6 NC_001847.1 + 105690 0.66 0.872007
Target:  5'- gGCGGCGcuucGGCcGCGgGCgGCGCCa -3'
miRNA:   3'- -CGCUGCcau-UUGaCGCgCGaCGCGGc -5'
6681 3' -56.6 NC_001847.1 + 35839 0.66 0.872007
Target:  5'- uCGACGc---GCUGCGCGagcugagGCGCCa -3'
miRNA:   3'- cGCUGCcauuUGACGCGCga-----CGCGGc -5'
6681 3' -56.6 NC_001847.1 + 66507 0.66 0.872007
Target:  5'- aGCGgcGCGGUGGAg-GCGCGC--CGCCu -3'
miRNA:   3'- -CGC--UGCCAUUUgaCGCGCGacGCGGc -5'
6681 3' -56.6 NC_001847.1 + 127781 0.66 0.872007
Target:  5'- aGCGGCGccGgcAGCaGCGCGCUGacgGCUa -3'
miRNA:   3'- -CGCUGC--CauUUGaCGCGCGACg--CGGc -5'
6681 3' -56.6 NC_001847.1 + 117571 0.66 0.872007
Target:  5'- uGC-ACGGggg---GCGCGCUGC-CCGg -3'
miRNA:   3'- -CGcUGCCauuugaCGCGCGACGcGGC- -5'
6681 3' -56.6 NC_001847.1 + 7239 0.66 0.872007
Target:  5'- aGCGGCuGGUcggguGGCUGUGCGg-GCGCgGc -3'
miRNA:   3'- -CGCUG-CCAu----UUGACGCGCgaCGCGgC- -5'
6681 3' -56.6 NC_001847.1 + 50460 0.66 0.872007
Target:  5'- -gGACGGcAAgccGCUGC-CGCagaccgGCGCCGg -3'
miRNA:   3'- cgCUGCCaUU---UGACGcGCGa-----CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 83971 0.66 0.872007
Target:  5'- -aGACGuGUAccguACcGCGCGaagGCGCCGu -3'
miRNA:   3'- cgCUGC-CAUu---UGaCGCGCga-CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 92648 0.66 0.872007
Target:  5'- cCGGCGGUuucGCccGCaGCGCUucggcGCGCCGc -3'
miRNA:   3'- cGCUGCCAuu-UGa-CG-CGCGA-----CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 65009 0.66 0.872007
Target:  5'- uGCGAgCGGaccgcAAGCgGCGCGa-GCGCCa -3'
miRNA:   3'- -CGCU-GCCa----UUUGaCGCGCgaCGCGGc -5'
6681 3' -56.6 NC_001847.1 + 38596 0.66 0.872007
Target:  5'- cUGGCGuUGAGC-GCGCGCgucgccugacGCGCCGu -3'
miRNA:   3'- cGCUGCcAUUUGaCGCGCGa---------CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 50350 0.66 0.872007
Target:  5'- cGCuAgGGUaAAGCUG-GCGCUG-GCCGg -3'
miRNA:   3'- -CGcUgCCA-UUUGACgCGCGACgCGGC- -5'
6681 3' -56.6 NC_001847.1 + 84700 0.66 0.872007
Target:  5'- cGUGGCcGUAGAagGCGCuGCcuuUGCGCCGg -3'
miRNA:   3'- -CGCUGcCAUUUgaCGCG-CG---ACGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 37445 0.66 0.872007
Target:  5'- aCGACGGcGAGCgcagcaGCGgGCcUGCGuuGg -3'
miRNA:   3'- cGCUGCCaUUUGa-----CGCgCG-ACGCggC- -5'
6681 3' -56.6 NC_001847.1 + 17893 0.66 0.871275
Target:  5'- cGgGGCGGgcGGCgGCGUGCUGUugguaacgggcggGUCGu -3'
miRNA:   3'- -CgCUGCCauUUGaCGCGCGACG-------------CGGC- -5'
6681 3' -56.6 NC_001847.1 + 78192 0.66 0.871275
Target:  5'- uGUGGucguaGGUGAACUGCaGCGCcGCaaacucgGCCGa -3'
miRNA:   3'- -CGCUg----CCAUUUGACG-CGCGaCG-------CGGC- -5'
6681 3' -56.6 NC_001847.1 + 41176 0.66 0.865341
Target:  5'- gGCGGCuagcuuuaGGUAGACguuuugcgcggcgacGCGCGUcGCGCCc -3'
miRNA:   3'- -CGCUG--------CCAUUUGa--------------CGCGCGaCGCGGc -5'
6681 3' -56.6 NC_001847.1 + 77211 0.66 0.864589
Target:  5'- cGCGACGG--AGCcGCGgGC--CGCCGg -3'
miRNA:   3'- -CGCUGCCauUUGaCGCgCGacGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 48138 0.66 0.864589
Target:  5'- cGCGGCccaGGUAAccGCcggGCcgGCGC-GCGCCGg -3'
miRNA:   3'- -CGCUG---CCAUU--UGa--CG--CGCGaCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.