miRNA display CGI


Results 21 - 40 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6681 3' -56.6 NC_001847.1 + 33072 0.66 0.882031
Target:  5'- uGCGGCaGUAcuuuCUGCgcggcgcgcaguacaGCGCUcGCGCCa -3'
miRNA:   3'- -CGCUGcCAUuu--GACG---------------CGCGA-CGCGGc -5'
6681 3' -56.6 NC_001847.1 + 123293 0.66 0.880625
Target:  5'- cGCGAcucaaguccauccucCGcUAGGCgcccccccccccGCGCGCUGUGCCGu -3'
miRNA:   3'- -CGCU---------------GCcAUUUGa-----------CGCGCGACGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 62598 0.66 0.87921
Target:  5'- -gGGCaGGcAAAgaGCGCGUgcacggGCGCCGg -3'
miRNA:   3'- cgCUG-CCaUUUgaCGCGCGa-----CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 102999 0.66 0.87921
Target:  5'- cGCGGCGuGcgcGGGCgcgGCgGCGCccaGCGCCGg -3'
miRNA:   3'- -CGCUGC-Ca--UUUGa--CG-CGCGa--CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 52254 0.66 0.87921
Target:  5'- cGCGccGCGGcuuGGCUGCG-GC-GCGCCc -3'
miRNA:   3'- -CGC--UGCCau-UUGACGCgCGaCGCGGc -5'
6681 3' -56.6 NC_001847.1 + 90697 0.66 0.87921
Target:  5'- cGCG-CGcGU--GCcGCGCGCcGCGCCc -3'
miRNA:   3'- -CGCuGC-CAuuUGaCGCGCGaCGCGGc -5'
6681 3' -56.6 NC_001847.1 + 13006 0.66 0.87921
Target:  5'- cGCGGCGcc---CUGCGCGCcG-GCCGu -3'
miRNA:   3'- -CGCUGCcauuuGACGCGCGaCgCGGC- -5'
6681 3' -56.6 NC_001847.1 + 88271 0.66 0.87921
Target:  5'- gGgGACGGgggGAGCgcuucGCcUGCUGgGCCGa -3'
miRNA:   3'- -CgCUGCCa--UUUGa----CGcGCGACgCGGC- -5'
6681 3' -56.6 NC_001847.1 + 88099 0.66 0.87921
Target:  5'- uCGGCGGUG----GCGCgGCUG-GCCGg -3'
miRNA:   3'- cGCUGCCAUuugaCGCG-CGACgCGGC- -5'
6681 3' -56.6 NC_001847.1 + 108058 0.66 0.87921
Target:  5'- gGCGACGccuccAGCgUGgGCGCgGUGCCGc -3'
miRNA:   3'- -CGCUGCcau--UUG-ACgCGCGaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 65752 0.66 0.87921
Target:  5'- aGCGugguggcccGCGGgcgcAAGCUGCGCGCcGUGUa- -3'
miRNA:   3'- -CGC---------UGCCa---UUUGACGCGCGaCGCGgc -5'
6681 3' -56.6 NC_001847.1 + 133272 0.66 0.87921
Target:  5'- uUGGCGcGUcuAAGCcGCGCGgUGCGCUc -3'
miRNA:   3'- cGCUGC-CA--UUUGaCGCGCgACGCGGc -5'
6681 3' -56.6 NC_001847.1 + 14169 0.66 0.87921
Target:  5'- gGCGACGGccgcGCUuacGCgGCGCUGgGuCCGc -3'
miRNA:   3'- -CGCUGCCauu-UGA---CG-CGCGACgC-GGC- -5'
6681 3' -56.6 NC_001847.1 + 96290 0.66 0.87921
Target:  5'- uGCGAgcaGGUGGugUGUGag-UGCGCCGc -3'
miRNA:   3'- -CGCUg--CCAUUugACGCgcgACGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 131392 0.66 0.877072
Target:  5'- uCGACGGcGAcgaagcgcugcacgGCcGCGUGC-GCGCCGu -3'
miRNA:   3'- cGCUGCCaUU--------------UGaCGCGCGaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 89878 0.66 0.876355
Target:  5'- cGCGGCGGgcuucgcCGCGCUcaCGCCGg -3'
miRNA:   3'- -CGCUGCCauuugacGCGCGAc-GCGGC- -5'
6681 3' -56.6 NC_001847.1 + 36017 0.66 0.876355
Target:  5'- gGCGugGuGcugGGGCUGCGCGCggacgagcacuacGCGCgGc -3'
miRNA:   3'- -CGCugC-Ca--UUUGACGCGCGa------------CGCGgC- -5'
6681 3' -56.6 NC_001847.1 + 54767 0.66 0.872007
Target:  5'- cGUGGCGGUGcAUaauggguuuUGCGCacGCcGCGCCu -3'
miRNA:   3'- -CGCUGCCAUuUG---------ACGCG--CGaCGCGGc -5'
6681 3' -56.6 NC_001847.1 + 90827 0.66 0.872007
Target:  5'- cCGGCGGgcAccgcucuggcGCUGgcccgcCGCGCcGCGCCGc -3'
miRNA:   3'- cGCUGCCauU----------UGAC------GCGCGaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 84700 0.66 0.872007
Target:  5'- cGUGGCcGUAGAagGCGCuGCcuuUGCGCCGg -3'
miRNA:   3'- -CGCUGcCAUUUgaCGCG-CG---ACGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.