miRNA display CGI


Results 21 - 40 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6681 3' -56.6 NC_001847.1 + 69439 0.77 0.29337
Target:  5'- cGCGGCGGUGgcgGACggcgGCGCGCgcgcgGCGgCGg -3'
miRNA:   3'- -CGCUGCCAU---UUGa---CGCGCGa----CGCgGC- -5'
6681 3' -56.6 NC_001847.1 + 122686 0.77 0.299557
Target:  5'- aGCcGCGG-AGGCUccgccgcGCGCGCUGUGCCGg -3'
miRNA:   3'- -CGcUGCCaUUUGA-------CGCGCGACGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 130494 0.77 0.30025
Target:  5'- cGCGGCGcGUcGGGCUgagGCGCGCgaGCGCCGg -3'
miRNA:   3'- -CGCUGC-CA-UUUGA---CGCGCGa-CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 11664 0.77 0.30025
Target:  5'- gGCGGCGGUGAAggGgGCGCUGCaucgGCCu -3'
miRNA:   3'- -CGCUGCCAUUUgaCgCGCGACG----CGGc -5'
6681 3' -56.6 NC_001847.1 + 27681 0.77 0.30025
Target:  5'- cGCGGCGcGUcGGGCUgagGCGCGCgaGCGCCGg -3'
miRNA:   3'- -CGCUGC-CA-UUUGA---CGCGCGa-CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 7348 0.77 0.30025
Target:  5'- aGCGGUGGUAGcCgucaGCGCGCUGCuGCCGg -3'
miRNA:   3'- -CGCUGCCAUUuGa---CGCGCGACG-CGGC- -5'
6681 3' -56.6 NC_001847.1 + 2957 0.77 0.307254
Target:  5'- cGCGGCGGcc-GCcucgGCGCGCaGCGCCGc -3'
miRNA:   3'- -CGCUGCCauuUGa---CGCGCGaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 54385 0.77 0.314383
Target:  5'- uGCGGCGGgcGGCcGCGgGCgaggcggGCGCCGc -3'
miRNA:   3'- -CGCUGCCauUUGaCGCgCGa------CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 86095 0.76 0.329013
Target:  5'- cGCGGCcGUGAGCUGCGCGCcaccacgGCucGCCGc -3'
miRNA:   3'- -CGCUGcCAUUUGACGCGCGa------CG--CGGC- -5'
6681 3' -56.6 NC_001847.1 + 106620 0.76 0.336514
Target:  5'- cGCGGcCGGgcGGCggcgGCGCGCUGCcggGCCa -3'
miRNA:   3'- -CGCU-GCCauUUGa---CGCGCGACG---CGGc -5'
6681 3' -56.6 NC_001847.1 + 3807 0.76 0.336514
Target:  5'- cGCGGcCGGgcGGCggcgGCGCGCUGCcggGCCa -3'
miRNA:   3'- -CGCU-GCCauUUGa---CGCGCGACG---CGGc -5'
6681 3' -56.6 NC_001847.1 + 110695 0.76 0.336514
Target:  5'- cGCGAgGGUGAggGCgGCGCGCU-CGCCu -3'
miRNA:   3'- -CGCUgCCAUU--UGaCGCGCGAcGCGGc -5'
6681 3' -56.6 NC_001847.1 + 106760 0.76 0.34414
Target:  5'- cGCGGCGGgggGGGCgccgucuccgGCGCGaggGCGCCGg -3'
miRNA:   3'- -CGCUGCCa--UUUGa---------CGCGCga-CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 122134 0.76 0.34414
Target:  5'- cGCGACGGccg---GCGCGCaggGCGCCGc -3'
miRNA:   3'- -CGCUGCCauuugaCGCGCGa--CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 85820 0.76 0.351889
Target:  5'- aGCGACGGggcgAAGaaGCGCGUuaUGCGUCGa -3'
miRNA:   3'- -CGCUGCCa---UUUgaCGCGCG--ACGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 85733 0.76 0.351889
Target:  5'- aCGGCGGcAGGCUGCGCGgaGCccGCCa -3'
miRNA:   3'- cGCUGCCaUUUGACGCGCgaCG--CGGc -5'
6681 3' -56.6 NC_001847.1 + 2839 0.76 0.35976
Target:  5'- cCGGCGGgcUGAACaGCGCGC-GCGCCa -3'
miRNA:   3'- cGCUGCC--AUUUGaCGCGCGaCGCGGc -5'
6681 3' -56.6 NC_001847.1 + 60399 0.76 0.35976
Target:  5'- -aGACGGgcauGCUcGCGCGCgcaaGCGCCGa -3'
miRNA:   3'- cgCUGCCauu-UGA-CGCGCGa---CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 112858 0.76 0.35976
Target:  5'- cGCGuucgucACGGccGACacgcGCGCGCUGCGCCGc -3'
miRNA:   3'- -CGC------UGCCauUUGa---CGCGCGACGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 105652 0.76 0.35976
Target:  5'- cCGGCGGgcUGAACaGCGCGC-GCGCCa -3'
miRNA:   3'- cGCUGCC--AUUUGaCGCGCGaCGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.