miRNA display CGI


Results 21 - 40 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6681 3' -56.6 NC_001847.1 + 48138 0.66 0.864589
Target:  5'- cGCGGCccaGGUAAccGCcggGCcgGCGC-GCGCCGg -3'
miRNA:   3'- -CGCUG---CCAUU--UGa--CG--CGCGaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 82566 0.66 0.856963
Target:  5'- cGCGcGCGGUAcACggaGCGCG-UGCGCg- -3'
miRNA:   3'- -CGC-UGCCAUuUGa--CGCGCgACGCGgc -5'
6681 3' -56.6 NC_001847.1 + 36017 0.66 0.876355
Target:  5'- gGCGugGuGcugGGGCUGCGCGCggacgagcacuacGCGCgGc -3'
miRNA:   3'- -CGCugC-Ca--UUUGACGCGCGa------------CGCGgC- -5'
6681 3' -56.6 NC_001847.1 + 17222 0.66 0.864589
Target:  5'- uCGACcGUAaaGACgucGCGCGC-GUGCCGa -3'
miRNA:   3'- cGCUGcCAU--UUGa--CGCGCGaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 65009 0.66 0.872007
Target:  5'- uGCGAgCGGaccgcAAGCgGCGCGa-GCGCCa -3'
miRNA:   3'- -CGCU-GCCa----UUUGaCGCGCgaCGCGGc -5'
6681 3' -56.6 NC_001847.1 + 54767 0.66 0.872007
Target:  5'- cGUGGCGGUGcAUaauggguuuUGCGCacGCcGCGCCu -3'
miRNA:   3'- -CGCUGCCAUuUG---------ACGCG--CGaCGCGGc -5'
6681 3' -56.6 NC_001847.1 + 7239 0.66 0.872007
Target:  5'- aGCGGCuGGUcggguGGCUGUGCGg-GCGCgGc -3'
miRNA:   3'- -CGCUG-CCAu----UUGACGCGCgaCGCGgC- -5'
6681 3' -56.6 NC_001847.1 + 84700 0.66 0.872007
Target:  5'- cGUGGCcGUAGAagGCGCuGCcuuUGCGCCGg -3'
miRNA:   3'- -CGCUGcCAUUUgaCGCG-CG---ACGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 3464 0.66 0.864589
Target:  5'- uCGACaGcAAGC-GCGCGCcggcGCGCCGa -3'
miRNA:   3'- cGCUGcCaUUUGaCGCGCGa---CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 117571 0.66 0.872007
Target:  5'- uGC-ACGGggg---GCGCGCUGC-CCGg -3'
miRNA:   3'- -CGcUGCCauuugaCGCGCGACGcGGC- -5'
6681 3' -56.6 NC_001847.1 + 91724 0.66 0.849133
Target:  5'- cGCGACGcGaggcccAGCUGCaGCGCccUGCGCgCGu -3'
miRNA:   3'- -CGCUGC-Cau----UUGACG-CGCG--ACGCG-GC- -5'
6681 3' -56.6 NC_001847.1 + 35839 0.66 0.872007
Target:  5'- uCGACGc---GCUGCGCGagcugagGCGCCa -3'
miRNA:   3'- cGCUGCcauuUGACGCGCga-----CGCGGc -5'
6681 3' -56.6 NC_001847.1 + 2557 0.66 0.872007
Target:  5'- cCGGCGG---GCUGUcuucgGCGCggGCGCCu -3'
miRNA:   3'- cGCUGCCauuUGACG-----CGCGa-CGCGGc -5'
6681 3' -56.6 NC_001847.1 + 38596 0.66 0.872007
Target:  5'- cUGGCGuUGAGC-GCGCGCgucgccugacGCGCCGu -3'
miRNA:   3'- cGCUGCcAUUUGaCGCGCGa---------CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 59025 0.66 0.856963
Target:  5'- uGCGACGGU-GGC-GgGUGCgGCGgCGg -3'
miRNA:   3'- -CGCUGCCAuUUGaCgCGCGaCGCgGC- -5'
6681 3' -56.6 NC_001847.1 + 26317 0.66 0.864589
Target:  5'- uCGugGGgcAGCguccccagGCGCGCgaagGCGgCGu -3'
miRNA:   3'- cGCugCCauUUGa-------CGCGCGa---CGCgGC- -5'
6681 3' -56.6 NC_001847.1 + 70440 0.66 0.861564
Target:  5'- gGUGGCGGUGccgcgccugacgcACUGCgacacGCGCggGCGCCc -3'
miRNA:   3'- -CGCUGCCAUu------------UGACG-----CGCGa-CGCGGc -5'
6681 3' -56.6 NC_001847.1 + 47868 0.66 0.856963
Target:  5'- uGCG-CGGgcGcgcGCaGCGCGCgcGCGCCc -3'
miRNA:   3'- -CGCuGCCauU---UGaCGCGCGa-CGCGGc -5'
6681 3' -56.6 NC_001847.1 + 125832 0.66 0.864589
Target:  5'- gGCuGgGGUGGGCUGgGCuggGCUGgGCUGg -3'
miRNA:   3'- -CGcUgCCAUUUGACgCG---CGACgCGGC- -5'
6681 3' -56.6 NC_001847.1 + 77211 0.66 0.864589
Target:  5'- cGCGACGG--AGCcGCGgGC--CGCCGg -3'
miRNA:   3'- -CGCUGCCauUUGaCGCgCGacGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.