miRNA display CGI


Results 21 - 40 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6681 3' -56.6 NC_001847.1 + 3875 0.71 0.590652
Target:  5'- aGCGGCGGc-GGCccGuCGCGCgGCGCCGc -3'
miRNA:   3'- -CGCUGCCauUUGa-C-GCGCGaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 3919 0.69 0.702553
Target:  5'- gGCGcCGGU----UGCGCGCccGCGCUGg -3'
miRNA:   3'- -CGCuGCCAuuugACGCGCGa-CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 3947 0.7 0.672262
Target:  5'- cGCGGCGGgggGGGCgccgucuccgGCG-GCgaggGCGCCGg -3'
miRNA:   3'- -CGCUGCCa--UUUGa---------CGCgCGa---CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 4166 0.66 0.886194
Target:  5'- aGCGAgCGGgccuuguuuUGGGCcGCGCGCccgUGgGCCGc -3'
miRNA:   3'- -CGCU-GCC---------AUUUGaCGCGCG---ACgCGGC- -5'
6681 3' -56.6 NC_001847.1 + 4226 0.7 0.672262
Target:  5'- uGCG-CGGUGccGGC-GCGCGCcggcacgagcUGCGCCa -3'
miRNA:   3'- -CGCuGCCAU--UUGaCGCGCG----------ACGCGGc -5'
6681 3' -56.6 NC_001847.1 + 4277 0.69 0.692504
Target:  5'- uUGGCGGccacgAGGC-GCGCGCcgGCGCCu -3'
miRNA:   3'- cGCUGCCa----UUUGaCGCGCGa-CGCGGc -5'
6681 3' -56.6 NC_001847.1 + 4421 0.66 0.884123
Target:  5'- aCGGCGGcGAGC-GCGCGCcGCagggaaacgcgcacGCCGu -3'
miRNA:   3'- cGCUGCCaUUUGaCGCGCGaCG--------------CGGC- -5'
6681 3' -56.6 NC_001847.1 + 4876 0.69 0.692504
Target:  5'- gGCGGCGGgcAGCgGCaGgGCccccGCGCCGc -3'
miRNA:   3'- -CGCUGCCauUUGaCG-CgCGa---CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 5070 0.67 0.832892
Target:  5'- aCGGCGGgccggGAGCgggcgGCaGUGCgGCGCCu -3'
miRNA:   3'- cGCUGCCa----UUUGa----CG-CGCGaCGCGGc -5'
6681 3' -56.6 NC_001847.1 + 5219 0.72 0.560339
Target:  5'- cGCGACGG-AAGCUGCGCaugGCUccGUGCa- -3'
miRNA:   3'- -CGCUGCCaUUUGACGCG---CGA--CGCGgc -5'
6681 3' -56.6 NC_001847.1 + 5221 0.7 0.65189
Target:  5'- cGCGGCGGccGGCgggGCGCGC-GCGgCa -3'
miRNA:   3'- -CGCUGCCauUUGa--CGCGCGaCGCgGc -5'
6681 3' -56.6 NC_001847.1 + 5596 0.7 0.672262
Target:  5'- cGCGGuagcuccacuCGGUAGACggGCGUGg-GCGCCGc -3'
miRNA:   3'- -CGCU----------GCCAUUUGa-CGCGCgaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 5869 0.68 0.798287
Target:  5'- uCGA-GGUGGuccagcGCUGCGCGCagggcggccGCGCCGu -3'
miRNA:   3'- cGCUgCCAUU------UGACGCGCGa--------CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 6043 0.78 0.254666
Target:  5'- -gGACGuUAAACUGCGCGCgcacGUGCCGa -3'
miRNA:   3'- cgCUGCcAUUUGACGCGCGa---CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 6155 0.72 0.520642
Target:  5'- gGUGGCGGU-GACgGCGCGCagGUGCuCGg -3'
miRNA:   3'- -CGCUGCCAuUUGaCGCGCGa-CGCG-GC- -5'
6681 3' -56.6 NC_001847.1 + 6685 0.72 0.550326
Target:  5'- cGCGGCGGccGGCcggGCGCGCgcgcaGgGCCGa -3'
miRNA:   3'- -CGCUGCCauUUGa--CGCGCGa----CgCGGC- -5'
6681 3' -56.6 NC_001847.1 + 6898 0.72 0.560339
Target:  5'- uGCGuCGGcGAGC-GCGCGC-GCGCCc -3'
miRNA:   3'- -CGCuGCCaUUUGaCGCGCGaCGCGGc -5'
6681 3' -56.6 NC_001847.1 + 7239 0.66 0.872007
Target:  5'- aGCGGCuGGUcggguGGCUGUGCGg-GCGCgGc -3'
miRNA:   3'- -CGCUG-CCAu----UUGACGCGCgaCGCGgC- -5'
6681 3' -56.6 NC_001847.1 + 7348 0.77 0.30025
Target:  5'- aGCGGUGGUAGcCgucaGCGCGCUGCuGCCGg -3'
miRNA:   3'- -CGCUGCCAUUuGa---CGCGCGACG-CGGC- -5'
6681 3' -56.6 NC_001847.1 + 8091 0.66 0.886194
Target:  5'- cGCGGCG--AGAUcgGCGaCGCgGCGCCa -3'
miRNA:   3'- -CGCUGCcaUUUGa-CGC-GCGaCGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.