miRNA display CGI


Results 1 - 20 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6681 3' -56.6 NC_001847.1 + 63 0.69 0.736226
Target:  5'- uGCGGCGGgcggGGGCggggugggggauggGCGCGgaGCGCg- -3'
miRNA:   3'- -CGCUGCCa---UUUGa-------------CGCGCgaCGCGgc -5'
6681 3' -56.6 NC_001847.1 + 489 0.69 0.702553
Target:  5'- gGCGGCGGcgGGGCgGC-CGC-GCGCCa -3'
miRNA:   3'- -CGCUGCCa-UUUGaCGcGCGaCGCGGc -5'
6681 3' -56.6 NC_001847.1 + 555 0.71 0.580509
Target:  5'- cGUGGCGGcGGACgccaGCGcCGCgucuccgGCGCCGg -3'
miRNA:   3'- -CGCUGCCaUUUGa---CGC-GCGa------CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 1063 0.68 0.751732
Target:  5'- aGCGGCGGcgccGGGCUGUuCGCUGCuccccGCCu -3'
miRNA:   3'- -CGCUGCCa---UUUGACGcGCGACG-----CGGc -5'
6681 3' -56.6 NC_001847.1 + 1138 0.68 0.76129
Target:  5'- aGCGGCGGcgccuCgGCGCGCgGCuCCGg -3'
miRNA:   3'- -CGCUGCCauuu-GaCGCGCGaCGcGGC- -5'
6681 3' -56.6 NC_001847.1 + 1209 0.69 0.692504
Target:  5'- uGCGcuCGGUGuuCUuuuaGCGCGCggGCGCCc -3'
miRNA:   3'- -CGCu-GCCAUuuGA----CGCGCGa-CGCGGc -5'
6681 3' -56.6 NC_001847.1 + 1411 0.66 0.856963
Target:  5'- cGCGGCGGcacGGGCacCGCGgUGCGCgGg -3'
miRNA:   3'- -CGCUGCCa--UUUGacGCGCgACGCGgC- -5'
6681 3' -56.6 NC_001847.1 + 1513 0.69 0.732311
Target:  5'- aGCcGCGcGUAGGCggccucgGCGCGCgcgaagGCGCCc -3'
miRNA:   3'- -CGcUGC-CAUUUGa------CGCGCGa-----CGCGGc -5'
6681 3' -56.6 NC_001847.1 + 1593 0.67 0.841107
Target:  5'- cGCGccgcuCGGgccAGCgcgcgGCGCaCUGCGCCGc -3'
miRNA:   3'- -CGCu----GCCau-UUGa----CGCGcGACGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 2212 0.69 0.712544
Target:  5'- gGCGGCaGUAGGCcgccaGCGcCGCgGCGCUGg -3'
miRNA:   3'- -CGCUGcCAUUUGa----CGC-GCGaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 2329 0.69 0.702553
Target:  5'- cGCgGGCGGgcAGCgGCGgcuccCGCcGCGCCGg -3'
miRNA:   3'- -CG-CUGCCauUUGaCGC-----GCGaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 2392 0.75 0.409516
Target:  5'- aCGGCGGUGAcgcGCUcggccgugGCuCGCUGCGCCGc -3'
miRNA:   3'- cGCUGCCAUU---UGA--------CGcGCGACGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 2557 0.66 0.872007
Target:  5'- cCGGCGG---GCUGUcuucgGCGCggGCGCCu -3'
miRNA:   3'- cGCUGCCauuUGACG-----CGCGa-CGCGGc -5'
6681 3' -56.6 NC_001847.1 + 2839 0.76 0.35976
Target:  5'- cCGGCGGgcUGAACaGCGCGC-GCGCCa -3'
miRNA:   3'- cGCUGCC--AUUUGaCGCGCGaCGCGGc -5'
6681 3' -56.6 NC_001847.1 + 2957 0.77 0.307254
Target:  5'- cGCGGCGGcc-GCcucgGCGCGCaGCGCCGc -3'
miRNA:   3'- -CGCUGCCauuUGa---CGCGCGaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 3029 0.7 0.682404
Target:  5'- aGgGGCGGUcacguCUGCGCGCccaGCaGCCGc -3'
miRNA:   3'- -CgCUGCCAuuu--GACGCGCGa--CG-CGGC- -5'
6681 3' -56.6 NC_001847.1 + 3313 0.71 0.600826
Target:  5'- cGCGgcGCGGgcGccGCUGC-CGCcgGCGCCGg -3'
miRNA:   3'- -CGC--UGCCauU--UGACGcGCGa-CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 3464 0.66 0.864589
Target:  5'- uCGACaGcAAGC-GCGCGCcggcGCGCCGa -3'
miRNA:   3'- cGCUGcCaUUUGaCGCGCGa---CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 3697 0.66 0.886194
Target:  5'- cGCGcaccACaGGUAGGCgcgGCaaucGCGC-GCGCCGg -3'
miRNA:   3'- -CGC----UG-CCAUUUGa--CG----CGCGaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 3807 0.76 0.336514
Target:  5'- cGCGGcCGGgcGGCggcgGCGCGCUGCcggGCCa -3'
miRNA:   3'- -CGCU-GCCauUUGa---CGCGCGACG---CGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.