miRNA display CGI


Results 1 - 20 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6681 3' -56.6 NC_001847.1 + 121110 1.1 0.001975
Target:  5'- cGCGACGGUAAACUGCGCGCUGCGCCGc -3'
miRNA:   3'- -CGCUGCCAUUUGACGCGCGACGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 60304 0.83 0.140042
Target:  5'- gGCGGCGGgcGGCaGCGCGC-GCGCCa -3'
miRNA:   3'- -CGCUGCCauUUGaCGCGCGaCGCGGc -5'
6681 3' -56.6 NC_001847.1 + 117410 0.8 0.189887
Target:  5'- uGCGcGCGGUGGACgcuucGCGCgGCUGCGCCc -3'
miRNA:   3'- -CGC-UGCCAUUUGa----CGCG-CGACGCGGc -5'
6681 3' -56.6 NC_001847.1 + 59345 0.8 0.19468
Target:  5'- gGCGGCGGcGAGgUcGCGCGCcGCGCCGa -3'
miRNA:   3'- -CGCUGCCaUUUgA-CGCGCGaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 53019 0.8 0.214919
Target:  5'- aGCGGCGGcc-GCUGCGCGCUcGgGCCu -3'
miRNA:   3'- -CGCUGCCauuUGACGCGCGA-CgCGGc -5'
6681 3' -56.6 NC_001847.1 + 38059 0.8 0.214919
Target:  5'- cGCcGCGGcUAAGCUGCGCGCgGCgGCCGc -3'
miRNA:   3'- -CGcUGCC-AUUUGACGCGCGaCG-CGGC- -5'
6681 3' -56.6 NC_001847.1 + 133970 0.79 0.231261
Target:  5'- cGCGGCGGUGGccuuCUGCGCGgCcGCGCUGc -3'
miRNA:   3'- -CGCUGCCAUUu---GACGCGC-GaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 31157 0.79 0.231261
Target:  5'- cGCGGCGGUGGccuuCUGCGCGgCcGCGCUGc -3'
miRNA:   3'- -CGCUGCCAUUu---GACGCGC-GaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 55348 0.79 0.242729
Target:  5'- cGCGGCGGU--GCUGaaCGCGCcgcggGCGCCGg -3'
miRNA:   3'- -CGCUGCCAuuUGAC--GCGCGa----CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 121615 0.79 0.242729
Target:  5'- gGCGGCGGUu-GCUGcCGCuGCUGCuGCCGc -3'
miRNA:   3'- -CGCUGCCAuuUGAC-GCG-CGACG-CGGC- -5'
6681 3' -56.6 NC_001847.1 + 36403 0.79 0.245078
Target:  5'- gGCGACGGUGcACUcGCGCGCagacccugcgacgcGCGCCGu -3'
miRNA:   3'- -CGCUGCCAUuUGA-CGCGCGa-------------CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 72058 0.78 0.248638
Target:  5'- cGCGGCGGUuGGC-GCGCagaaGCUGCGCCc -3'
miRNA:   3'- -CGCUGCCAuUUGaCGCG----CGACGCGGc -5'
6681 3' -56.6 NC_001847.1 + 108747 0.78 0.254666
Target:  5'- cGCGACGGcguucCUGcCGCGCUggGCGCCGg -3'
miRNA:   3'- -CGCUGCCauuu-GAC-GCGCGA--CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 6043 0.78 0.254666
Target:  5'- -gGACGuUAAACUGCGCGCgcacGUGCCGa -3'
miRNA:   3'- cgCUGCcAUUUGACGCGCGa---CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 34011 0.78 0.260813
Target:  5'- cGCGGCGGU--GCUGggcacCGCGCUGgGCCa -3'
miRNA:   3'- -CGCUGCCAuuUGAC-----GCGCGACgCGGc -5'
6681 3' -56.6 NC_001847.1 + 127073 0.78 0.260813
Target:  5'- cGCGGCGGUGccccccuCUGCGCGC-GgGCCGc -3'
miRNA:   3'- -CGCUGCCAUuu-----GACGCGCGaCgCGGC- -5'
6681 3' -56.6 NC_001847.1 + 47909 0.78 0.260813
Target:  5'- cGCGGCGGUGAGC-GCuGCGCaGCGCUu -3'
miRNA:   3'- -CGCUGCCAUUUGaCG-CGCGaCGCGGc -5'
6681 3' -56.6 NC_001847.1 + 14809 0.78 0.267081
Target:  5'- aGCGGCGG--AGCUGCGCGgcgccCUGCGCgCGg -3'
miRNA:   3'- -CGCUGCCauUUGACGCGC-----GACGCG-GC- -5'
6681 3' -56.6 NC_001847.1 + 129256 0.78 0.277361
Target:  5'- uGCGACGGcgcggccgccCUGCGCGCaGCGCUGg -3'
miRNA:   3'- -CGCUGCCauuu------GACGCGCGaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 72319 0.78 0.278014
Target:  5'- cGUGGCGGUGGACgcgGaCGCGCUGCuggugcugcaggaaGCCGu -3'
miRNA:   3'- -CGCUGCCAUUUGa--C-GCGCGACG--------------CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.