miRNA display CGI


Results 1 - 20 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6681 3' -56.6 NC_001847.1 + 85820 0.76 0.351889
Target:  5'- aGCGACGGggcgAAGaaGCGCGUuaUGCGUCGa -3'
miRNA:   3'- -CGCUGCCa---UUUgaCGCGCG--ACGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 69439 0.77 0.29337
Target:  5'- cGCGGCGGUGgcgGACggcgGCGCGCgcgcgGCGgCGg -3'
miRNA:   3'- -CGCUGCCAU---UUGa---CGCGCGa----CGCgGC- -5'
6681 3' -56.6 NC_001847.1 + 7348 0.77 0.30025
Target:  5'- aGCGGUGGUAGcCgucaGCGCGCUGCuGCCGg -3'
miRNA:   3'- -CGCUGCCAUUuGa---CGCGCGACG-CGGC- -5'
6681 3' -56.6 NC_001847.1 + 130494 0.77 0.30025
Target:  5'- cGCGGCGcGUcGGGCUgagGCGCGCgaGCGCCGg -3'
miRNA:   3'- -CGCUGC-CA-UUUGA---CGCGCGa-CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 54385 0.77 0.314383
Target:  5'- uGCGGCGGgcGGCcGCGgGCgaggcggGCGCCGc -3'
miRNA:   3'- -CGCUGCCauUUGaCGCgCGa------CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 106620 0.76 0.336514
Target:  5'- cGCGGcCGGgcGGCggcgGCGCGCUGCcggGCCa -3'
miRNA:   3'- -CGCU-GCCauUUGa---CGCGCGACG---CGGc -5'
6681 3' -56.6 NC_001847.1 + 106760 0.76 0.34414
Target:  5'- cGCGGCGGgggGGGCgccgucuccgGCGCGaggGCGCCGg -3'
miRNA:   3'- -CGCUGCCa--UUUGa---------CGCGCga-CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 122134 0.76 0.34414
Target:  5'- cGCGACGGccg---GCGCGCaggGCGCCGc -3'
miRNA:   3'- -CGCUGCCauuugaCGCGCGa--CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 85733 0.76 0.351889
Target:  5'- aCGGCGGcAGGCUGCGCGgaGCccGCCa -3'
miRNA:   3'- cGCUGCCaUUUGACGCGCgaCG--CGGc -5'
6681 3' -56.6 NC_001847.1 + 72319 0.78 0.278014
Target:  5'- cGUGGCGGUGGACgcgGaCGCGCUGCuggugcugcaggaaGCCGu -3'
miRNA:   3'- -CGCUGCCAUUUGa--C-GCGCGACG--------------CGGC- -5'
6681 3' -56.6 NC_001847.1 + 14809 0.78 0.267081
Target:  5'- aGCGGCGG--AGCUGCGCGgcgccCUGCGCgCGg -3'
miRNA:   3'- -CGCUGCCauUUGACGCGC-----GACGCG-GC- -5'
6681 3' -56.6 NC_001847.1 + 34011 0.78 0.260813
Target:  5'- cGCGGCGGU--GCUGggcacCGCGCUGgGCCa -3'
miRNA:   3'- -CGCUGCCAuuUGAC-----GCGCGACgCGGc -5'
6681 3' -56.6 NC_001847.1 + 60304 0.83 0.140042
Target:  5'- gGCGGCGGgcGGCaGCGCGC-GCGCCa -3'
miRNA:   3'- -CGCUGCCauUUGaCGCGCGaCGCGGc -5'
6681 3' -56.6 NC_001847.1 + 117410 0.8 0.189887
Target:  5'- uGCGcGCGGUGGACgcuucGCGCgGCUGCGCCc -3'
miRNA:   3'- -CGC-UGCCAUUUGa----CGCG-CGACGCGGc -5'
6681 3' -56.6 NC_001847.1 + 53019 0.8 0.214919
Target:  5'- aGCGGCGGcc-GCUGCGCGCUcGgGCCu -3'
miRNA:   3'- -CGCUGCCauuUGACGCGCGA-CgCGGc -5'
6681 3' -56.6 NC_001847.1 + 133970 0.79 0.231261
Target:  5'- cGCGGCGGUGGccuuCUGCGCGgCcGCGCUGc -3'
miRNA:   3'- -CGCUGCCAUUu---GACGCGC-GaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 55348 0.79 0.242729
Target:  5'- cGCGGCGGU--GCUGaaCGCGCcgcggGCGCCGg -3'
miRNA:   3'- -CGCUGCCAuuUGAC--GCGCGa----CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 121615 0.79 0.242729
Target:  5'- gGCGGCGGUu-GCUGcCGCuGCUGCuGCCGc -3'
miRNA:   3'- -CGCUGCCAuuUGAC-GCG-CGACG-CGGC- -5'
6681 3' -56.6 NC_001847.1 + 36403 0.79 0.245078
Target:  5'- gGCGACGGUGcACUcGCGCGCagacccugcgacgcGCGCCGu -3'
miRNA:   3'- -CGCUGCCAUuUGA-CGCGCGa-------------CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 6043 0.78 0.254666
Target:  5'- -gGACGuUAAACUGCGCGCgcacGUGCCGa -3'
miRNA:   3'- cgCUGCcAUUUGACGCGCGa---CGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.