miRNA display CGI


Results 1 - 20 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6681 3' -56.6 NC_001847.1 + 61982 0.66 0.888925
Target:  5'- cGCGGCGGgcAuaaugggcccgaagaGCgGCGCGgggccCUGCgGCCGu -3'
miRNA:   3'- -CGCUGCCauU---------------UGaCGCGC-----GACG-CGGC- -5'
6681 3' -56.6 NC_001847.1 + 13006 0.66 0.87921
Target:  5'- cGCGGCGcc---CUGCGCGCcG-GCCGu -3'
miRNA:   3'- -CGCUGCcauuuGACGCGCGaCgCGGC- -5'
6681 3' -56.6 NC_001847.1 + 89878 0.66 0.876355
Target:  5'- cGCGGCGGgcuucgcCGCGCUcaCGCCGg -3'
miRNA:   3'- -CGCUGCCauuugacGCGCGAc-GCGGC- -5'
6681 3' -56.6 NC_001847.1 + 59345 0.8 0.19468
Target:  5'- gGCGGCGGcGAGgUcGCGCGCcGCGCCGa -3'
miRNA:   3'- -CGCUGCCaUUUgA-CGCGCGaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 108447 0.66 0.886194
Target:  5'- -gGACGccGAGCUGCG-GCUGgagccCGCCGg -3'
miRNA:   3'- cgCUGCcaUUUGACGCgCGAC-----GCGGC- -5'
6681 3' -56.6 NC_001847.1 + 60736 0.66 0.886194
Target:  5'- uCGGCGGcccGCgcGCGCGCgGCgGCCGc -3'
miRNA:   3'- cGCUGCCauuUGa-CGCGCGaCG-CGGC- -5'
6681 3' -56.6 NC_001847.1 + 25991 0.66 0.886194
Target:  5'- -gGGCGGgcgGGCggGCGCGCagGCGCg- -3'
miRNA:   3'- cgCUGCCau-UUGa-CGCGCGa-CGCGgc -5'
6681 3' -56.6 NC_001847.1 + 21742 0.66 0.883427
Target:  5'- gGCGcCGGcccGC-GCGCGCgggggggccgccgGCGCCGg -3'
miRNA:   3'- -CGCuGCCauuUGaCGCGCGa------------CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 88099 0.66 0.87921
Target:  5'- uCGGCGGUG----GCGCgGCUG-GCCGg -3'
miRNA:   3'- cGCUGCCAUuugaCGCG-CGACgCGGC- -5'
6681 3' -56.6 NC_001847.1 + 52254 0.66 0.87921
Target:  5'- cGCGccGCGGcuuGGCUGCG-GC-GCGCCc -3'
miRNA:   3'- -CGC--UGCCau-UUGACGCgCGaCGCGGc -5'
6681 3' -56.6 NC_001847.1 + 133272 0.66 0.87921
Target:  5'- uUGGCGcGUcuAAGCcGCGCGgUGCGCUc -3'
miRNA:   3'- cGCUGC-CA--UUUGaCGCGCgACGCGGc -5'
6681 3' -56.6 NC_001847.1 + 90697 0.66 0.87921
Target:  5'- cGCG-CGcGU--GCcGCGCGCcGCGCCc -3'
miRNA:   3'- -CGCuGC-CAuuUGaCGCGCGaCGCGGc -5'
6681 3' -56.6 NC_001847.1 + 116657 0.66 0.886194
Target:  5'- cGCGGgcacgcUGGUGGcCUGCGUGUggguccgGCGCUGc -3'
miRNA:   3'- -CGCU------GCCAUUuGACGCGCGa------CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 108058 0.66 0.87921
Target:  5'- gGCGACGccuccAGCgUGgGCGCgGUGCCGc -3'
miRNA:   3'- -CGCUGCcau--UUG-ACgCGCGaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 132143 0.66 0.886194
Target:  5'- gGCGGCGcu--GCUGcCGCGCagggugGgGCCGg -3'
miRNA:   3'- -CGCUGCcauuUGAC-GCGCGa-----CgCGGC- -5'
6681 3' -56.6 NC_001847.1 + 102999 0.66 0.87921
Target:  5'- cGCGGCGuGcgcGGGCgcgGCgGCGCccaGCGCCGg -3'
miRNA:   3'- -CGCUGC-Ca--UUUGa--CG-CGCGa--CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 88271 0.66 0.87921
Target:  5'- gGgGACGGgggGAGCgcuucGCcUGCUGgGCCGa -3'
miRNA:   3'- -CgCUGCCa--UUUGa----CGcGCGACgCGGC- -5'
6681 3' -56.6 NC_001847.1 + 131392 0.66 0.877072
Target:  5'- uCGACGGcGAcgaagcgcugcacgGCcGCGUGC-GCGCCGu -3'
miRNA:   3'- cGCUGCCaUU--------------UGaCGCGCGaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 114953 0.66 0.886194
Target:  5'- -aGGCGGUGGuauucgcauACcgGCGCGCccguugccugaGCGCCGa -3'
miRNA:   3'- cgCUGCCAUU---------UGa-CGCGCGa----------CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 55008 0.66 0.886194
Target:  5'- gGCGGCGcUGGAguccaUGCGCGCgucggGCGCg- -3'
miRNA:   3'- -CGCUGCcAUUUg----ACGCGCGa----CGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.