miRNA display CGI


Results 1 - 20 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6681 3' -56.6 NC_001847.1 + 59025 0.66 0.856963
Target:  5'- uGCGACGGU-GGC-GgGUGCgGCGgCGg -3'
miRNA:   3'- -CGCUGCCAuUUGaCgCGCGaCGCgGC- -5'
6681 3' -56.6 NC_001847.1 + 26317 0.66 0.864589
Target:  5'- uCGugGGgcAGCguccccagGCGCGCgaagGCGgCGu -3'
miRNA:   3'- cGCugCCauUUGa-------CGCGCGa---CGCgGC- -5'
6681 3' -56.6 NC_001847.1 + 125792 0.66 0.864589
Target:  5'- gGCuGgGGUGGGCUGgGCuggGCUGgGCUGg -3'
miRNA:   3'- -CGcUgCCAUUUGACgCG---CGACgCGGC- -5'
6681 3' -56.6 NC_001847.1 + 20843 0.66 0.849133
Target:  5'- cGCGcGCGGUcgcaAAGCgagucUGCGCUGCGgCGg -3'
miRNA:   3'- -CGC-UGCCA----UUUGac---GCGCGACGCgGC- -5'
6681 3' -56.6 NC_001847.1 + 26769 0.66 0.864589
Target:  5'- cGCGGCcuGGUc-AgUGCGCGCgcccuccugcGCGCCGc -3'
miRNA:   3'- -CGCUG--CCAuuUgACGCGCGa---------CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 47868 0.66 0.856963
Target:  5'- uGCG-CGGgcGcgcGCaGCGCGCgcGCGCCc -3'
miRNA:   3'- -CGCuGCCauU---UGaCGCGCGa-CGCGGc -5'
6681 3' -56.6 NC_001847.1 + 16056 0.66 0.849133
Target:  5'- cGCGGCGGcc-GCgGCGCcucuGCUggGCGCCu -3'
miRNA:   3'- -CGCUGCCauuUGaCGCG----CGA--CGCGGc -5'
6681 3' -56.6 NC_001847.1 + 70440 0.66 0.861564
Target:  5'- gGUGGCGGUGccgcgccugacgcACUGCgacacGCGCggGCGCCc -3'
miRNA:   3'- -CGCUGCCAUu------------UGACG-----CGCGa-CGCGGc -5'
6681 3' -56.6 NC_001847.1 + 50048 0.66 0.856963
Target:  5'- gGCG-CGGUGGcggccGCggguccGCGCGCgGCGCgGa -3'
miRNA:   3'- -CGCuGCCAUU-----UGa-----CGCGCGaCGCGgC- -5'
6681 3' -56.6 NC_001847.1 + 32527 0.66 0.849133
Target:  5'- cGCGGCuGUcggAGGCgaUGCGCGCgcagcccucgGCGCUGg -3'
miRNA:   3'- -CGCUGcCA---UUUG--ACGCGCGa---------CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 90175 0.66 0.863836
Target:  5'- aGCGcagccuuGCGGggcuGCUGCG-GC-GCGCCGu -3'
miRNA:   3'- -CGC-------UGCCauu-UGACGCgCGaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 91724 0.66 0.849133
Target:  5'- cGCGACGcGaggcccAGCUGCaGCGCccUGCGCgCGu -3'
miRNA:   3'- -CGCUGC-Cau----UUGACG-CGCG--ACGCG-GC- -5'
6681 3' -56.6 NC_001847.1 + 71730 0.66 0.846746
Target:  5'- aCGGCGGUcuacaaGGAcCUGCuggagcacuugcacGCGCUGCGgCGg -3'
miRNA:   3'- cGCUGCCA------UUU-GACG--------------CGCGACGCgGC- -5'
6681 3' -56.6 NC_001847.1 + 97357 0.66 0.849133
Target:  5'- cGCGACuGGaucaccgagugGAGCUGaucgcgaaCGCGCUGCGCa- -3'
miRNA:   3'- -CGCUG-CCa----------UUUGAC--------GCGCGACGCGgc -5'
6681 3' -56.6 NC_001847.1 + 125832 0.66 0.864589
Target:  5'- gGCuGgGGUGGGCUGgGCuggGCUGgGCUGg -3'
miRNA:   3'- -CGcUgCCAUUUGACgCG---CGACgCGGC- -5'
6681 3' -56.6 NC_001847.1 + 82566 0.66 0.856963
Target:  5'- cGCGcGCGGUAcACggaGCGCG-UGCGCg- -3'
miRNA:   3'- -CGC-UGCCAUuUGa--CGCGCgACGCGgc -5'
6681 3' -56.6 NC_001847.1 + 70377 0.66 0.856963
Target:  5'- gGCGcCGGggcgcGAGCU-CGCGCUG-GCCa -3'
miRNA:   3'- -CGCuGCCa----UUUGAcGCGCGACgCGGc -5'
6681 3' -56.6 NC_001847.1 + 104224 0.66 0.856963
Target:  5'- cGCGGCGGcacGGGCacCGCGgUGCGCgGg -3'
miRNA:   3'- -CGCUGCCa--UUUGacGCGCgACGCGgC- -5'
6681 3' -56.6 NC_001847.1 + 112995 0.66 0.849133
Target:  5'- uGCGcCGGcuu-UUGCGCGCcGCcGCCGc -3'
miRNA:   3'- -CGCuGCCauuuGACGCGCGaCG-CGGC- -5'
6681 3' -56.6 NC_001847.1 + 27674 0.66 0.863836
Target:  5'- gGUGGCGGauucGAGCUGCcuuuauaGCGCcgGCGCaCGc -3'
miRNA:   3'- -CGCUGCCa---UUUGACG-------CGCGa-CGCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.