miRNA display CGI


Results 1 - 20 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6681 3' -56.6 NC_001847.1 + 135025 0.7 0.67023
Target:  5'- cGCgGGCGGggccgggGCGCGggGCGCCGg -3'
miRNA:   3'- -CG-CUGCCauuuga-CGCGCgaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 134763 0.68 0.798287
Target:  5'- aGCG-CGGUccg--GCGCGCgGCGCgCGg -3'
miRNA:   3'- -CGCuGCCAuuugaCGCGCGaCGCG-GC- -5'
6681 3' -56.6 NC_001847.1 + 134136 0.7 0.65189
Target:  5'- gGCGGCGGccuggugGAGC-GCGUGCcGCcGCCGg -3'
miRNA:   3'- -CGCUGCCa------UUUGaCGCGCGaCG-CGGC- -5'
6681 3' -56.6 NC_001847.1 + 133970 0.79 0.231261
Target:  5'- cGCGGCGGUGGccuuCUGCGCGgCcGCGCUGc -3'
miRNA:   3'- -CGCUGCCAUUu---GACGCGC-GaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 133906 0.67 0.815056
Target:  5'- uGCGGcCGGUGuaccuggccugcgGGCgGCGCGCgcuggagcugGCGCCc -3'
miRNA:   3'- -CGCU-GCCAU-------------UUGaCGCGCGa---------CGCGGc -5'
6681 3' -56.6 NC_001847.1 + 133687 0.68 0.797389
Target:  5'- cGCGGCGGc-AAC-GUGCGCUacacgguggccacGCGCCu -3'
miRNA:   3'- -CGCUGCCauUUGaCGCGCGA-------------CGCGGc -5'
6681 3' -56.6 NC_001847.1 + 133555 0.7 0.672262
Target:  5'- cGCGcUGGcccGAGCgGCGCGCUggcgcGCGCCGu -3'
miRNA:   3'- -CGCuGCCa--UUUGaCGCGCGA-----CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 133522 0.72 0.530472
Target:  5'- cGCGccGCGGU--GCUGCcgcgGCGCagUGCGCCGc -3'
miRNA:   3'- -CGC--UGCCAuuUGACG----CGCG--ACGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 133433 0.68 0.751732
Target:  5'- cGCGGCGGc-GGCUGauCGUGCUcGaCGCCGu -3'
miRNA:   3'- -CGCUGCCauUUGAC--GCGCGA-C-GCGGC- -5'
6681 3' -56.6 NC_001847.1 + 133393 0.73 0.501205
Target:  5'- cGCGgcGCGGUGGAguaccuCUGCGCGCgGCugGCCGc -3'
miRNA:   3'- -CGC--UGCCAUUU------GACGCGCGaCG--CGGC- -5'
6681 3' -56.6 NC_001847.1 + 133272 0.66 0.87921
Target:  5'- uUGGCGcGUcuAAGCcGCGCGgUGCGCUc -3'
miRNA:   3'- cGCUGC-CA--UUUGaCGCGCgACGCGGc -5'
6681 3' -56.6 NC_001847.1 + 133237 0.67 0.841107
Target:  5'- cGCGGCGGgcucuCgcaCGCGCUcgcgGCGCUGg -3'
miRNA:   3'- -CGCUGCCauuu-Gac-GCGCGA----CGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 132977 0.66 0.849133
Target:  5'- gGCGGCGcGggcGCUGCgagaccugGUGCUGCGCa- -3'
miRNA:   3'- -CGCUGC-CauuUGACG--------CGCGACGCGgc -5'
6681 3' -56.6 NC_001847.1 + 132809 0.69 0.702553
Target:  5'- cGCGGCGG-GAGCcGC-CGCUGC-CCGc -3'
miRNA:   3'- -CGCUGCCaUUUGaCGcGCGACGcGGC- -5'
6681 3' -56.6 NC_001847.1 + 132569 0.69 0.712544
Target:  5'- cGCGGCGGcc-GCgcagGCGC-CcGCGCCGa -3'
miRNA:   3'- -CGCUGCCauuUGa---CGCGcGaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 132378 0.68 0.76129
Target:  5'- cCGGCGGgggcgccGGCgccgGCGcCGCcGCGCCGg -3'
miRNA:   3'- cGCUGCCau-----UUGa---CGC-GCGaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 132274 0.73 0.507973
Target:  5'- cGCGGCGGcccgcgcgucggccUGGGCgcugGCGCGC-GCGCUGu -3'
miRNA:   3'- -CGCUGCC--------------AUUUGa---CGCGCGaCGCGGC- -5'
6681 3' -56.6 NC_001847.1 + 132179 0.73 0.510885
Target:  5'- cCGGCGGc--GCUGCGCGCcgagGCgGCCGc -3'
miRNA:   3'- cGCUGCCauuUGACGCGCGa---CG-CGGC- -5'
6681 3' -56.6 NC_001847.1 + 132143 0.66 0.886194
Target:  5'- gGCGGCGcu--GCUGcCGCGCagggugGgGCCGg -3'
miRNA:   3'- -CGCUGCcauuUGAC-GCGCGa-----CgCGGC- -5'
6681 3' -56.6 NC_001847.1 + 132140 0.69 0.732311
Target:  5'- cGCGACGcGgugGAGC-GCGCGCggcuccaGCGCgCGg -3'
miRNA:   3'- -CGCUGC-Ca--UUUGaCGCGCGa------CGCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.